RchiOBHm_Chr6g0276991

WD40-like Beta Propeller Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002386
Physical Location & Seq
Forward (+)
39360166 .. 39360720
555 bp
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UTR
Exon/CDS
Intron
PRQ24848

Sequence Viewer

Length: 555 bp
ATGCCCTCGTATATTTATTTTCCATATTACCCTTCTTCTCCAACAATTTTTCTCCAGTCTCTCTCTCGCTATCATCGAATCCCAAATCCCCAACTGTTGCATTCAGTGCCCGGAAGCCTCCTCCACGACCGACCCATCATCAAGGACGGCAAGCTCTACCTCATCTCAGCTCACGAACAGCCCGATCGGCTTTTCAAGAGCTGGTCTGCTCTCTATTCCACTGAGCTTGATGATCATAACAAAAAGAAAACCACCCGATTGACTCCACCTGGGTCCGTCGATTACAATCCGGCCGTTTCTCTCTCGGCGAGTTCGTCGCTGTCGCTTCTTACGGCTCTCGTCCCTGGAACGGCTAGTTTCACCAGCTCAATACTGACATCATCGTCTTCCGAGCTTCACAACCCGAAAAGCGTGTGGTGGTCTGTGAGCGCGGCGGGTTGTCCTCCTGGTCCGGCGACTCTGTCATCTACTTTCATCGCTAAGACGACGACGGCTGGTGAACCATTTTCCGAATTGATTTCCCCCAAGATTTCGAGTCCTCCACATACTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPPIV_N PD40

Protein Analysis

184

Amino Acids

20.03

Weight (kDa)

9.21

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
AccII CGCG 1 cut(s) 431
AciI CCGC 2 cut(s) 431, 434
AcoI YGGCCR 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 3 cut(s) 268, 343, 445
AluBI AGCT 6 cut(s) 154, 170, 201, 226, 366, 394
AluI AGCT 6 cut(s) 154, 170, 201, 226, 366, 394
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 2 cut(s) 273, 449
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 352, 509
AvaII GGWCC 2 cut(s) 273, 449
BaeGI GKGCMC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 378
BccI CCATC 1 cut(s) 143
BceAI ACGGC 5 cut(s) 163, 278, 348, 366, 507
BciT130I CCWGG 3 cut(s) 270, 345, 447
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 354
BglI GCCNNNNNGGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 4 cut(s) 111, 270, 345, 447
Bme18I GGWCC 2 cut(s) 273, 449
BmgT120I GGNCC 2 cut(s) 273, 449
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 4 cut(s) 111, 270, 345, 447
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 269, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 3 cut(s) 270, 345, 447
BseDI CCNNGG 2 cut(s) 269, 343
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 180, 213
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 3 cut(s) 130, 187, 294
BshFI GGCC 1 cut(s) 293
BsiEI CGRYCG 3 cut(s) 130, 187, 294
BsiSI CCGG 3 cut(s) 111, 290, 452
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 184, 232
BspACI CCGC 2 cut(s) 431, 434
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 2 cut(s) 179, 214
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 269, 343
BssMI GATC 2 cut(s) 184, 232
Bst2UI CCWGG 3 cut(s) 270, 345, 447
Bst4CI ACNGT 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 166, 222, 480
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 2 cut(s) 187, 235
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 184, 232
BstMCI CGRYCG 3 cut(s) 130, 187, 294
BstMWI GCNNNNNNNGC 2 cut(s) 106, 187
BstNI CCWGG 3 cut(s) 270, 345, 447
BstSCI CCNGG 4 cut(s) 109, 268, 343, 445
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 378
BstZI CGGCCG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 111, 219
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 273, 449
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
DdeI CTNAG 3 cut(s) 166, 222, 480
DpnI GATC 2 cut(s) 186, 234
DpnII GATC 2 cut(s) 184, 232
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 291
EagI CGGCCG 1 cut(s) 291
EclXI CGGCCG 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 273, 449
Eco52I CGGCCG 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 268, 343, 445
FaiI YATR 4 cut(s) 12, 25, 237, 546
FaqI GGGAC 1 cut(s) 326
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 354
GlaI GCGC 1 cut(s) 430
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 293
HapII CCGG 3 cut(s) 111, 290, 452
HhaI GCGC 1 cut(s) 431
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HinfI GANTC 4 cut(s) 78, 262, 457, 535
HpaII CCGG 3 cut(s) 111, 290, 452
HphI GGTGA 2 cut(s) 352, 509
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 391, 511
Hpy188III TCNNGA 2 cut(s) 173, 196
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 4 cut(s) 281, 319, 490, 493
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 187
HpyF3I CTNAG 3 cut(s) 166, 222, 480
HspAI GCGC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 184, 232
MaeI CTAG 1 cut(s) 354
MalI GATC 2 cut(s) 186, 234
MboI GATC 2 cut(s) 184, 232
MboII GAAGA 2 cut(s) 27, 378
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 2 cut(s) 45, 512
MlyI GAGTC 3 cut(s) 256, 451, 544
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 6 cut(s) 16, 128, 131, 170, 453, 549
MspI CCGG 3 cut(s) 111, 290, 452
MspR9I CCNGG 4 cut(s) 111, 270, 345, 447
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 3 cut(s) 270, 345, 447
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 106, 187
NciI CCSGG 1 cut(s) 111
NdeII GATC 2 cut(s) 184, 232
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 284
PcsI WCGNNNNNNNCGW 3 cut(s) 73, 180, 311
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 460
PkrI GCNGC 1 cut(s) 433
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 3 cut(s) 256, 451, 543
PpsI GAGTC 3 cut(s) 256, 451, 543
Psp6I CCWGG 3 cut(s) 268, 343, 445
PspGI CCWGG 3 cut(s) 268, 343, 445
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 273, 449
PsyI GACNNNGTC 1 cut(s) 460
PvuI CGATCG 1 cut(s) 187
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 2 cut(s) 184, 232
Sau96I GGNCC 2 cut(s) 273, 449
SchI GAGTC 3 cut(s) 256, 451, 544
ScrFI CCNGG 4 cut(s) 111, 270, 345, 447
SduI GDGCHC 1 cut(s) 111
SetI ASST 8 cut(s) 156, 162, 172, 203, 228, 271, 368, 396
SinI GGWCC 2 cut(s) 273, 449
Sse9I AATT 2 cut(s) 45, 512
SsiI CCGC 2 cut(s) 431, 434
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 4 cut(s) 109, 268, 343, 445
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 76, 279, 533
TaqII GACCGA 1 cut(s) 144
TasI AATT 2 cut(s) 45, 512
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 1 cut(s) 78
TscAI CASTG 2 cut(s) 111, 226
TspDTI ATGAA 1 cut(s) 463
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 111, 226
Tth111I GACNNNGTC 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 273, 449
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.