Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

32739347 .. 32740020

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTGCCTGCGGTGGACGACCCCCAGACAGGGCGGAGACGGTAGCGGTGACAGGTTGGCGGTGCCATGATGCTCAGGCCAGCATCCTTGCTTGGGTTTGGGCCTCTGGGCCTGGGCTTGGATCAAATGGGCCTAATCTCTCTTGGGCCTATTTCAGTAGGTTTGAGAAGTGGGCTTGGGTCATTGGGCCGCTCCAGCTTGGGCTAGTTGAGTCTGCTACAGTTGCTTTGGACAAGAAGAGCAAGACCAACCGGTTGCCGAGGTTGTTGGCTCCTGAAGAGGCTAAGGGTAGTACTGGCTCCAACCCTAAGGGGGAGGAGCTAGTATTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.88

Weight (kDa)

8.71

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	193
AciI	CCGC	5 cut(s)	12, 35, 47, 61, 191
AclWI	GGATC	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	5 cut(s)	30, 31, 94, 119, 313
AgeI	ACCGGT	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	199, 322
AluI	AGCT	2 cut(s)	199, 322
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	6 cut(s)	78, 102, 110, 131, 147, 188
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	252
AspS9I	GGNCC	5 cut(s)	102, 110, 131, 147, 188
AsuHPI	GGTGA	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	206, 323
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	6, 191
BlsI	GCNGC	2 cut(s)	7, 192
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	114
BmgT120I	GGNCC	5 cut(s)	102, 110, 131, 147, 188
BmiI	GGNNCC	3 cut(s)	65, 273, 301
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	61, 93
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	2 cut(s)	75, 285
BsaJI	CCNNGG	2 cut(s)	113, 260
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 31, 94, 119, 313
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 260
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	30, 31, 94, 119, 313
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	332
BshFI	GGCC	6 cut(s)	80, 104, 112, 133, 149, 190
BshNI	GGYRCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	5 cut(s)	30, 31, 94, 119, 313
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	6 cut(s)	80, 104, 112, 133, 149, 190
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	5 cut(s)	12, 35, 47, 61, 191
BspANI	GGCC	6 cut(s)	80, 104, 112, 133, 149, 190
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	65, 273, 301
BspPI	GGATC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	113, 260
BssMI	GATC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	43, 223
Bst6I	CTCTTC	2 cut(s)	233, 273
BstC8I	GCNNGC	2 cut(s)	10, 82
BstDEI	CTNAG	3 cut(s)	75, 285, 309
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 224
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	6 cut(s)	80, 104, 112, 133, 149, 190
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	10, 82
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	5 cut(s)	102, 110, 131, 147, 188
Csp6I	GTAC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	1 cut(s)	68
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	75, 285, 309
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	233, 273
EarI	CTCTTC	2 cut(s)	233, 273
EciI	GGCGGA	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	71
FaiI	YATR	1 cut(s)	69
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	6, 191
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	6, 191
FspBI	CTAG	2 cut(s)	206, 323
GluI	GCNGC	2 cut(s)	6, 191
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	6 cut(s)	80, 104, 112, 133, 149, 190
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	43, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 224
HpyF3I	CTNAG	3 cut(s)	75, 285, 309
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	4 cut(s)	198, 277, 305, 319
LweI	GCATC	2 cut(s)	61, 93
MaeI	CTAG	2 cut(s)	206, 323
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	124
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	250, 290
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	115, 255, 274, 310
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	196, 224
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	65, 273, 301
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	7, 192
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	65, 273, 301
PspPI	GGNCC	5 cut(s)	102, 110, 131, 147, 188
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	2 cut(s)	6, 191
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	5 cut(s)	102, 110, 131, 147, 188
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	5 cut(s)	58, 164, 201, 266, 324
SfaNI	GCATC	2 cut(s)	61, 93
SfcI	CTRYAG	1 cut(s)	219
SsiI	CCGC	5 cut(s)	12, 35, 47, 61, 191
SspMI	CTAG	2 cut(s)	206, 323
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	43, 223
TatI	WGTACW	1 cut(s)	293
TauI	GCSGC	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	49
XspI	CTAG	2 cut(s)	206, 323
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.