Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

40468490 .. 40473673

Gene Structure 5184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAAGTACTCTCCAACACTCGCTGGCTCTCCAGAGTCCTCAAGTCTCCAATCTTCATCTTCTCCGAACGACTCCTCGCTCCCGACGCGCTTGTCTCCGATGGCGGAAGTTCACCACTCTCTCTCTCTGGCATTACTCGAGGTTGTCTTTCGCTGACGGAGCAGCGCTCGATGATGACACTTGGGGCACCCTTTTCATCTGAGGCGAGTGCGGTTGAAGCTATCCCCACAGAGGCTGTGAATGAGCTGTACGATGGAATGGTGGAATCTGTGAATGTTAAACGGTTGATGCCCCCTAATGCTTGGTTGTGCTCCTTGATTGAGAATTGCAAAAATCAGGATGATATTAAGCTTTTATTTGACATCTTGCAGAACCTGCGACGATTTAGACTGTCAAATCTACGCATCCATTCGGATTTTAATTGCAATCTCTGCCAAGAGTCGGGTTTCCGGTTCCGAGATCAAACCAAGAGGGCTGCTGCCGAGTTGGAGTATAGGCTTGGATTCTCCACCTGCAAATCTGACCACAGAAGCGATGCTATCAAAGACTGGATTAGAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

7.59

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	521
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	2 cut(s)	384, 521
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	105, 212
AfaI	GTAC	2 cut(s)	9, 251
AfeI	AGCGCT	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	232, 442
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	3 cut(s)	221, 247, 352
AluI	AGCT	3 cut(s)	221, 247, 352
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	51, 100
AlwNI	CAGNNNCTG	2 cut(s)	236, 376
Ama87I	CYCGRG	1 cut(s)	138
Aor51HI	AGCGCT	1 cut(s)	167
ApeKI	GCWGC	3 cut(s)	163, 476, 479
AspLEI	GCGC	2 cut(s)	91, 168
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	175, 463, 466
BccI	CCATC	2 cut(s)	95, 248
BcoDI	GTCTC	2 cut(s)	51, 100
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	2 cut(s)	384, 521
BisI	GCNGC	3 cut(s)	164, 477, 480
BlsI	GCNGC	3 cut(s)	165, 478, 481
BmcAI	AGTACT	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	189, 455
BmsI	GCATC	3 cut(s)	279, 414, 526
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 442
Bse1I	ACTGG	1 cut(s)	554
BseGI	GGATG	2 cut(s)	346, 405
BseLI	CCNNNNNNNGG	2 cut(s)	232, 442
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	175, 463, 466
Bsh1236I	CGCG	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	232, 442
BsmAI	GTCTC	2 cut(s)	51, 100
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	190, 314
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	2 cut(s)	105, 212
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	189, 455
BspMI	ACCTGC	2 cut(s)	384, 521
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	554
BssMI	GATC	1 cut(s)	460
Bst4CI	ACNGT	2 cut(s)	285, 393
BstAPI	GCANNNNNTGC	2 cut(s)	376, 432
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	346, 405
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	91, 168
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	2 cut(s)	51, 100
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 160, 218, 376, 432
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	175, 463, 466
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	346, 405
BveI	ACCTGC	2 cut(s)	384, 521
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	2 cut(s)	236, 376
CfoI	GCGC	2 cut(s)	91, 168
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	8, 250
CviJI	RGCY	7 cut(s)	28, 221, 236, 247, 352, 476, 499
CviKI_1	RGCY	7 cut(s)	28, 221, 236, 247, 352, 476, 499
CviQI	GTAC	2 cut(s)	8, 250
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	138
FaiI	YATR	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	164, 477, 480
FokI	GGATG	2 cut(s)	353, 392
Fsp4HI	GCNGC	3 cut(s)	164, 477, 480
GlaI	GCGC	2 cut(s)	90, 167
GluI	GCNGC	3 cut(s)	164, 477, 480
GsuI	CTGGAG	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	169
HapII	CCGG	1 cut(s)	451
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	91, 168
Hin6I	GCGC	2 cut(s)	89, 166
HinP1I	GCGC	2 cut(s)	89, 166
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	5 cut(s)	36, 72, 266, 440, 504
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	6 cut(s)	67, 100, 202, 415, 458, 523
Hpy188III	TCNNGA	3 cut(s)	33, 83, 338
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	2 cut(s)	89, 384
HpyCH4III	ACNGT	2 cut(s)	285, 393
HpyCH4V	TGCA	5 cut(s)	4, 330, 370, 426, 516
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 160, 218, 376, 432
HpyF3I	CTNAG	1 cut(s)	201
HspAI	GCGC	2 cut(s)	89, 166
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	3 cut(s)	85, 160, 317
LpnPI	CCDG	8 cut(s)	10, 46, 114, 323, 389, 464, 526, 535
Lsp1109I	GCAGC	3 cut(s)	175, 463, 466
LweI	GCATC	3 cut(s)	279, 414, 526
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	2 cut(s)	46, 52
MhlI	GDGCHC	2 cut(s)	190, 314
MluCI	AATT	2 cut(s)	325, 421
MlyI	GAGTC	3 cut(s)	45, 66, 449
MmeI	TCCRAC	2 cut(s)	39, 468
MnlI	CCTC	6 cut(s)	50, 86, 134, 196, 226, 465
MseI	TTAA	3 cut(s)	279, 348, 420
MspI	CCGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	86, 160, 218, 376, 432
NdeII	GATC	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	189, 455
NmeAIII	GCCGAG	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	266, 504
PkrI	GCNGC	3 cut(s)	165, 478, 481
PleI	GAGTC	3 cut(s)	44, 66, 448
PpsI	GAGTC	3 cut(s)	44, 66, 448
PspN4I	GGNNCC	2 cut(s)	189, 455
PspXI	VCTCGAGB	1 cut(s)	138
PstNI	CAGNNNCTG	2 cut(s)	236, 376
RsaI	GTAC	2 cut(s)	9, 251
RsaNI	GTAC	2 cut(s)	8, 250
SaqAI	TTAA	3 cut(s)	279, 348, 420
SatI	GCNGC	3 cut(s)	164, 477, 480
Sau3AI	GATC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	3 cut(s)	45, 66, 449
SduI	GDGCHC	2 cut(s)	190, 314
SetI	ASST	6 cut(s)	145, 223, 249, 354, 378, 515
SfaNI	GCATC	3 cut(s)	279, 414, 526
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	41, 138
SmoI	CTYRAG	2 cut(s)	41, 138
Sse9I	AATT	2 cut(s)	325, 421
SsiI	CCGC	2 cut(s)	105, 212
TaaI	ACNGT	2 cut(s)	285, 393
TaqI	TCGA	2 cut(s)	139, 170
TasI	AATT	2 cut(s)	325, 421
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	266, 504
Tru1I	TTAA	3 cut(s)	279, 348, 420
Tru9I	TTAA	3 cut(s)	279, 348, 420
TseI	GCWGC	3 cut(s)	163, 476, 479
TspDTI	ATGAA	2 cut(s)	46, 186
TspGWI	ACGGA	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.