RchiOBHm_Chr6g0277001

WD40-like Beta Propeller Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002386
Physical Location & Seq
Forward (+)
39361049 .. 39361354
306 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24849

Sequence Viewer

Length: 306 bp
ATGCTGAGGCTTCACGGCTTCTTCTGGACCTTCTCTCCTGACGTCGATCTCTTCGCGTTTAATCCTGATTTCGAAGGAAACCCCGGCGTCAAAATCTTCAAGTCCGACGGGTCCAAGTGTTGGACTTTAATCAAAGGCCGTAAGGCCTTCTACAACTGCTGGAGCCCCACAGAGAGACACGTCATATACACATCCATAGCCCAAGTTTTCCAGCGATCTTCTGGGCTGTTCGAGGTAGGAACTTTCTTTTACTCGTTGTGCTCTACACGCTGGTATAATTGGTTTTCAGTTTTGATTGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPPIV_N PD40

Protein Analysis

101

Amino Acids

11.92

Weight (kDa)

8.52

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 120
AccII CGCG 1 cut(s) 56
AcyI GRCGYC 2 cut(s) 42, 87
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 2 cut(s) 136, 144
AspS9I GGNCC 2 cut(s) 27, 111
AsuC2I CCSGG 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 27, 111
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 1 cut(s) 5
BceAI ACGGC 2 cut(s) 31, 123
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 27, 111
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 27, 111
BmiI GGNNCC 2 cut(s) 112, 164
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 2 cut(s) 42, 87
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 138, 146
BsiHKAI GWGCWC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 2 cut(s) 138, 146
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 167, 263
Bsp143I GATC 2 cut(s) 46, 215
BspANI GGCC 2 cut(s) 138, 146
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 112, 164
BspT104I TTCGAA 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 46, 215
BssNI GRCGYC 2 cut(s) 42, 87
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 2 cut(s) 42, 87
BstBI TTCGAA 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 5
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 2 cut(s) 49, 218
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 46, 215
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 56
BsuRI GGCC 2 cut(s) 138, 146
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 27, 111
CseI GACGC 1 cut(s) 76
CviJI RGCY 7 cut(s) 10, 18, 138, 146, 165, 200, 226
CviKI_1 RGCY 7 cut(s) 10, 18, 138, 146, 165, 200, 226
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 48, 217
DpnII GATC 2 cut(s) 46, 215
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 27, 111
EcoT38I GRGCYC 1 cut(s) 167
FaiI YATR 4 cut(s) 185, 187, 197, 276
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 2 cut(s) 138, 146
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 2 cut(s) 42, 87
HpaII CCGG 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 25, 38, 65
Hpy99I CGWCG 2 cut(s) 47, 110
HpyAV CCTTC 3 cut(s) 40, 68, 157
HpyCH4IV ACGT 2 cut(s) 42, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 2 cut(s) 42, 180
Hsp92I GRCGYC 2 cut(s) 42, 87
Kzo9I GATC 2 cut(s) 46, 215
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 8 cut(s) 10, 51, 78, 97, 145, 207, 224, 256
MaeII ACGT 2 cut(s) 42, 180
MalI GATC 2 cut(s) 48, 217
MboI GATC 2 cut(s) 46, 215
MboII GAAGA 4 cut(s) 13, 43, 88, 210
MhlI GDGCHC 2 cut(s) 167, 263
MluCI AATT 1 cut(s) 277
MmeI TCCRAC 2 cut(s) 101, 129
MnlI CCTC 1 cut(s) 226
MseI TTAA 2 cut(s) 60, 128
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 267
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 46, 215
NlaIV GGNNCC 2 cut(s) 112, 164
NspV TTCGAA 1 cut(s) 72
PceI AGGCCT 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 112, 164
PspPI GGNCC 2 cut(s) 27, 111
SaqAI TTAA 2 cut(s) 60, 128
Sau3AI GATC 2 cut(s) 46, 215
Sau96I GGNCC 2 cut(s) 27, 111
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 2 cut(s) 167, 263
SetI ASST 4 cut(s) 32, 45, 183, 237
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 2 cut(s) 27, 111
Sse9I AATT 1 cut(s) 277
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 82
TaiI ACGT 2 cut(s) 45, 183
TaqI TCGA 3 cut(s) 45, 72, 231
TasI AATT 1 cut(s) 277
Tru1I TTAA 2 cut(s) 60, 128
Tru9I TTAA 2 cut(s) 60, 128
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 27, 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.