Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

24459150 .. 24460996

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTTTGGTGGTACGGACGGCCGCCGGAGGGACAGACGGCGGCTGAGGAACCTTGGCCACTGGAGATTAGAGTTGCAGTTGTTTCTGCACGGGGTTGGGCTGGGCATCTTGGGCCTGGACTCCAACTTGGGCTGATGGGCTTGTATCCATCTGCTCAGGTTTGGGTTTGGGCTCTTGGGCCTGAGCTCAAGCTCACGTTTGGACTGTTTGAGTCTGTTGCAGAGGATTTCGACAGGAAGAGCAAGACCAACCTGTTGCCGAGGTTGTTGGTTCCTGAAGAGGCCGAGGAGAGTGCTAGCTCCAACCTTTTGGGGAAGGAGCTATCATTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.34

Weight (kDa)

4.8

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 41
AcoI	YGGCCR	2 cut(s)	20, 56
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	4 cut(s)	187, 193, 300, 322
AluI	AGCT	4 cut(s)	187, 193, 300, 322
Alw21I	GWGCWC	1 cut(s)	189
AoxI	GGCC	5 cut(s)	20, 56, 113, 179, 282
AspS9I	GGNCC	2 cut(s)	113, 179
AsuNHI	GCTAGC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	175, 189
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	130, 157
BceAI	ACGGC	2 cut(s)	35, 54
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	297, 334
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	23, 42
BlsI	GCNGC	2 cut(s)	24, 43
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	113, 179
BmiI	GGNNCC	2 cut(s)	51, 273
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	115
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	3 cut(s)	45, 156, 183
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	53, 260, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	53, 260, 285
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	36, 170, 174
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	302
BseX3I	CGGCCG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	5 cut(s)	22, 58, 115, 181, 284
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	5 cut(s)	22, 58, 115, 181, 284
Bsp1286I	GDGCHC	2 cut(s)	175, 189
BspACI	CCGC	2 cut(s)	23, 41
BspANI	GGCC	5 cut(s)	22, 58, 115, 181, 284
BspCNI	CTCAG	3 cut(s)	37, 169, 175
BspLI	GGNNCC	2 cut(s)	51, 273
BspOI	GCTAGC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	53, 260, 285
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	2 cut(s)	233, 273
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	45, 156, 183
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstZI	CGGCCG	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	22, 58, 115, 181, 284
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	113, 179
Csp6I	GTAC	1 cut(s)	13
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	45, 156, 183
EaeI	YGGCCR	2 cut(s)	20, 56
EagI	CGGCCG	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	233, 273
EarI	CTCTTC	2 cut(s)	233, 273
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	175, 189
Eco52I	CGGCCG	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	2 cut(s)	175, 189
ErhI	CCWWGG	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	23, 42
FriOI	GRGCYC	2 cut(s)	175, 189
Fsp4HI	GCNGC	2 cut(s)	23, 42
FspBI	CTAG	2 cut(s)	297, 334
GluI	GCNGC	2 cut(s)	23, 42
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	5 cut(s)	22, 58, 115, 181, 284
HapII	CCGG	1 cut(s)	26
HinfI	GANTC	2 cut(s)	120, 212
HpaII	CCGG	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	77, 89, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	3 cut(s)	45, 156, 183
HpySE526I	ACGT	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	305, 319
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	297, 334
MaeII	ACGT	1 cut(s)	197
MboII	GAAGA	2 cut(s)	250, 290
MhlI	GDGCHC	2 cut(s)	175, 189
MlsI	TGGCCA	1 cut(s)	58
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	114, 221
MmeI	TCCRAC	2 cut(s)	148, 327
MnlI	CCTC	6 cut(s)	22, 40, 217, 255, 274, 280
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	58
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	112
NheI	GCTAGC	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	51, 273
NmeAIII	GCCGAG	2 cut(s)	285, 310
PciSI	GCTCTTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	24, 43
PleI	GAGTC	2 cut(s)	114, 220
PpsI	GAGTC	2 cut(s)	114, 220
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	51, 273
PspPI	GGNCC	2 cut(s)	113, 179
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	2 cut(s)	23, 42
Sau96I	GGNCC	2 cut(s)	113, 179
SchI	GAGTC	2 cut(s)	114, 221
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	175, 189
SfaNI	GCATC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SsiI	CCGC	2 cut(s)	23, 41
SspMI	CTAG	2 cut(s)	297, 334
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	2 cut(s)	25, 44
TscAI	CASTG	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	66
XspI	CTAG	2 cut(s)	297, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.