Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011408.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

9100 .. 10029

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011408.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgctgaggcttcacggcttcttcccgaccttctctcccgacgccgatctcgtcgcgtttaatcccgatttccaaggaaacaccggcgtcaaaatcgtcaagtccgacgggtcaaagtgttggactttaatcaaagaccgcacggccttctacaactgctggagccccacagagagacacgtcatatacacatccataggcccaatcttccagtcagcaaagtacacggtccagatcgcgcgaatcgagtttgacccgtctgatctgaacggtgataaggaggacgtcccatgcaacgttaagatcctcactcgcgaagacacagggaataacgccttcgcttcctgctccccagacggcaagtcgcttgtcttccgatccggtcggaccggccacaagaacctctacattgtcgacgccgttaacggcgagtttaacggcggaatccgtcagttgacggaggggccgtgtattgataccatgccgagctggtcgcccagaggagacctcatcgccttctcttcgaaccggcacaaaccgcacgatgatgctgtgttcagcatttacgtcatcaacccggacggctcggggttacggaggatccacgtggcgggagatgacgtggacagggagaggatcaaccacgtgtgctttagtagagacggggagtggctggtgttcacggctaacttggacggcgtgacggctgagccggtgtcgtttccgaaccagtttcagccgtacggggatttgtacgtggtgagattggacgggagtgggctgaggaggctgacgtggaatgggtacgagaatggcacgccgacgtggcacacgggtgatgagctggacctggggcggctgcgtttgggtccttccgaagctggagataaactcaagggtcaatttgacgaacctcattggattatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

309

Amino Acids

34.5

Weight (kDa)

5.47

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	4 cut(s)	56, 239, 241, 315
AciI	CCGC	5 cut(s)	139, 441, 539, 611, 856
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	5 cut(s)	298, 372, 595, 608, 644
AcoI	YGGCCR	1 cut(s)	391
AcvI	CACGTG	2 cut(s)	607, 646
AcyI	GRCGYC	4 cut(s)	42, 87, 285, 417
AfaI	GTAC	4 cut(s)	224, 743, 755, 806
AfiI	CCNNNNNNNGG	1 cut(s)	610
AflIII	ACRYGT	2 cut(s)	178, 645
AhdI	GACNNNNNGTC	1 cut(s)	361
AjiI	CACGTC	4 cut(s)	181, 622, 795, 825
AjnI	CCWGG	1 cut(s)	849
AleI	CACNNNNGTG	1 cut(s)	834
AluBI	AGCT	3 cut(s)	489, 844, 881
AluI	AGCT	3 cut(s)	489, 844, 881
Alw26I	GTCTC	3 cut(s)	169, 498, 654
AlwI	GGATC	5 cut(s)	298, 372, 595, 608, 644
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	4 cut(s)	144, 199, 391, 464
ApeKI	GCWGC	1 cut(s)	859
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	6 cut(s)	200, 229, 387, 464, 847, 869
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	3 cut(s)	284, 772, 848
AsuII	TTCGAA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	4 cut(s)	229, 387, 847, 869
BamHI	GGATCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	167
BbrPI	CACGTG	2 cut(s)	607, 646
BbsI	GAAGAC	2 cut(s)	324, 364
BbvCI	CCTCAGC	2 cut(s)	5, 782
BbvI	GCAGC	1 cut(s)	846
BciT130I	CCWGG	1 cut(s)	851
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	169, 498, 654
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	2 cut(s)	857, 860
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	2 cut(s)	858, 861
Bme1390I	CCNGG	2 cut(s)	578, 851
Bme18I	GGWCC	4 cut(s)	229, 387, 847, 869
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	4 cut(s)	181, 622, 795, 825
BmgT120I	GGNCC	6 cut(s)	200, 229, 387, 464, 847, 869
BmiI	GGNNCC	4 cut(s)	164, 465, 602, 870
BmrFI	CCNGG	2 cut(s)	578, 851
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	2 cut(s)	324, 364
BplI	GAGNNNNNCTC	4 cut(s)	492, 524, 876, 908
BpmI	CTGGAG	2 cut(s)	181, 903
Bpu10I	CCTNAGC	2 cut(s)	5, 782
Bpu1102I	GCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	3 cut(s)	607, 646, 757
BsaHI	GRCGYC	4 cut(s)	42, 87, 285, 417
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	73, 850
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 452, 482, 606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse118I	RCCGGY	4 cut(s)	83, 389, 528, 712
Bse1I	ACTGG	2 cut(s)	211, 730
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	73, 850
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	699, 773
BseNI	ACTGG	2 cut(s)	211, 730
BseRI	GAGGAG	2 cut(s)	516, 799
BseXI	GCAGC	1 cut(s)	846
Bsh1236I	CGCG	4 cut(s)	56, 239, 241, 315
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	146, 201, 393, 466
BsiEI	CGRYCG	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	6 cut(s)	84, 381, 390, 529, 578, 713
BsiWI	CGTACG	1 cut(s)	741
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	3 cut(s)	169, 498, 654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	146, 201, 393, 466
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	5 cut(s)	139, 441, 539, 611, 856
BspANI	GGCC	4 cut(s)	146, 201, 393, 466
BspCNI	CTCAG	2 cut(s)	700, 774
BspFNI	CGCG	4 cut(s)	56, 239, 241, 315
BspLI	GGNNCC	4 cut(s)	164, 465, 602, 870
BspPI	GGATC	5 cut(s)	298, 372, 595, 608, 644
BspT104I	TTCGAA	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	498
BsrFI	RCCGGY	4 cut(s)	83, 389, 528, 712
BsrI	ACTGG	2 cut(s)	211, 730
BssAI	RCCGGY	4 cut(s)	83, 389, 528, 712
BssECI	CCNNGG	2 cut(s)	73, 850
BssMI	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
BssNI	GRCGYC	4 cut(s)	42, 87, 285, 417
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	2 cut(s)	229, 272
Bst6I	CTCTTC	1 cut(s)	526
BstACI	GRCGYC	4 cut(s)	42, 87, 285, 417
BstBAI	YACGTR	3 cut(s)	607, 646, 757
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	3 cut(s)	5, 708, 782
BstF5I	GGATG	1 cut(s)	191
BstFNI	CGCG	4 cut(s)	56, 239, 241, 315
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	7 cut(s)	49, 237, 265, 306, 380, 603, 639
BstMAI	GTCTC	3 cut(s)	169, 498, 654
BstMBI	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 787, 826
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	2 cut(s)	576, 849
BstUI	CGCG	4 cut(s)	56, 239, 241, 315
BstV1I	GCAGC	1 cut(s)	846
BstV2I	GAAGAC	2 cut(s)	324, 364
BstX2I	RGATCY	2 cut(s)	303, 600
BstYI	RGATCY	2 cut(s)	303, 600
BsuRI	GGCC	4 cut(s)	146, 201, 393, 466
BtgZI	GCGATG	1 cut(s)	496
BtrI	CACGTC	4 cut(s)	181, 622, 795, 825
BtsCI	GGATG	1 cut(s)	191
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	818
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	4 cut(s)	83, 389, 528, 712
Cfr13I	GGNCC	6 cut(s)	200, 229, 387, 464, 847, 869
CpoI	CGGWCCG	1 cut(s)	387
CseI	GACGC	3 cut(s)	50, 76, 425
Csp6I	GTAC	4 cut(s)	223, 742, 754, 805
CspI	CGGWCCG	1 cut(s)	387
CviAII	CATG	2 cut(s)	291, 481
CviQI	GTAC	4 cut(s)	223, 742, 754, 805
DdeI	CTNAG	3 cut(s)	5, 708, 782
DpnI	GATC	7 cut(s)	48, 236, 264, 305, 379, 602, 638
DpnII	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	526
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	4 cut(s)	229, 387, 847, 869
Eco72I	CACGTG	2 cut(s)	607, 646
Eco88I	CYCGRG	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	2 cut(s)	294, 484
FaiI	YATR	5 cut(s)	185, 187, 197, 292, 482
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	290, 480
FauI	CCCGC	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	857, 860
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	857, 860
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	2 cut(s)	857, 860
GsuI	CTGGAG	2 cut(s)	181, 903
HaeIII	GGCC	4 cut(s)	146, 201, 393, 466
HapII	CCGG	6 cut(s)	84, 381, 390, 529, 578, 713
HgaI	GACGC	3 cut(s)	50, 76, 425
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	4 cut(s)	42, 87, 285, 417
Hin1II	CATG	2 cut(s)	294, 484
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	3 cut(s)	415, 424, 456
HindII	GTYRAC	3 cut(s)	415, 424, 456
HinfI	GANTC	2 cut(s)	243, 444
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	6 cut(s)	84, 381, 390, 529, 578, 713
HphI	GGTGA	3 cut(s)	284, 772, 848
Hpy166II	GTNNAC	6 cut(s)	225, 415, 424, 456, 625, 681
Hpy188I	TCNGA	8 cut(s)	106, 262, 267, 377, 387, 726, 877, 929
Hpy188III	TCNNGA	5 cut(s)	25, 38, 65, 232, 314
Hpy8I	GTNNAC	6 cut(s)	225, 415, 424, 456, 625, 681
Hpy99I	CGWCG	5 cut(s)	44, 56, 110, 419, 826
HpyAV	CCTTC	5 cut(s)	40, 157, 346, 526, 882
HpyCH4III	ACNGT	2 cut(s)	229, 272
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 787, 826
HpyF3I	CTNAG	3 cut(s)	5, 708, 782
Hsp92I	GRCGYC	4 cut(s)	42, 87, 285, 417
Hsp92II	CATG	2 cut(s)	294, 484
HspAI	GCGC	1 cut(s)	239
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
LmnI	GCTCC	2 cut(s)	162, 353
Lsp1109I	GCAGC	1 cut(s)	846
LweI	GCATC	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	591, 700
MalI	GATC	7 cut(s)	48, 236, 264, 305, 379, 602, 638
MboI	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
MboII	GAAGA	5 cut(s)	13, 199, 329, 364, 513
MflI	RGATCY	2 cut(s)	303, 600
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	902
MmeI	TCCRAC	3 cut(s)	101, 129, 365
MseI	TTAA	5 cut(s)	60, 128, 300, 423, 435
MslI	CAYNNNNRTG	2 cut(s)	546, 834
MspI	CCGG	6 cut(s)	84, 381, 390, 529, 578, 713
MspR9I	CCNGG	2 cut(s)	578, 851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	4 cut(s)	56, 239, 241, 315
MwoI	GCNNNNNNNGC	3 cut(s)	538, 787, 826
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
NlaIII	CATG	2 cut(s)	294, 484
NlaIV	GGNNCC	4 cut(s)	164, 465, 602, 870
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	700
NruI	TCGCGA	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 102, 243, 464
PfeI	GAWTC	2 cut(s)	243, 444
Pfl23II	CGTACG	1 cut(s)	741
PkrI	GCNGC	2 cut(s)	858, 861
PmaCI	CACGTG	2 cut(s)	607, 646
PmlI	CACGTG	2 cut(s)	607, 646
Ppu21I	YACGTR	3 cut(s)	607, 646, 757
PpuMI	RGGWCCY	1 cut(s)	869
Psp1406I	AACGTT	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	849
PspCI	CACGTG	2 cut(s)	607, 646
PspGI	CCWGG	1 cut(s)	849
PspLI	CGTACG	1 cut(s)	741
PspN4I	GGNNCC	4 cut(s)	164, 465, 602, 870
PspPI	GGNCC	6 cut(s)	200, 229, 387, 464, 847, 869
PspPPI	RGGWCCY	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	303, 600
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	4 cut(s)	224, 743, 755, 806
RsaNI	GTAC	4 cut(s)	223, 742, 754, 805
RseI	CAYNNNNRTG	2 cut(s)	546, 834
Rsr2I	CGGWCCG	1 cut(s)	387
RsrII	CGGWCCG	1 cut(s)	387
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	5 cut(s)	60, 128, 300, 423, 435
SatI	GCNGC	2 cut(s)	857, 860
Sau3AI	GATC	7 cut(s)	46, 234, 262, 303, 377, 600, 636
Sau96I	GGNCC	6 cut(s)	200, 229, 387, 464, 847, 869
ScrFI	CCNGG	2 cut(s)	578, 851
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	524
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	4 cut(s)	229, 387, 847, 869
SmiMI	CAYNNNNRTG	2 cut(s)	546, 834
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	1 cut(s)	902
SsiI	CCGC	5 cut(s)	139, 441, 539, 611, 856
StyD4I	CCNGG	2 cut(s)	576, 849
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	229, 272
TaqI	TCGA	3 cut(s)	246, 414, 524
TasI	AATT	1 cut(s)	902
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	243, 444
Tru1I	TTAA	5 cut(s)	60, 128, 300, 423, 435
Tru9I	TTAA	5 cut(s)	60, 128, 300, 423, 435
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	859
Tsp45I	GTSAC	1 cut(s)	700
TspGWI	ACGGA	3 cut(s)	437, 473, 610
VpaK11BI	GGWCC	4 cut(s)	229, 387, 847, 869
XmiI	GTMKAC	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.