Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032328.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 900

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032328.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

atgcacagacggaaaaagaataatcgtcaccactctccgccgcaacacgaagttccgacacgtggaggtcttcgacgtcgacacgaagacgttccatccggtcacctcgacgctgaacccgaatttccaccatttcaacccgttcgtttctccggactcctagttcctcaggtaccaccgattctgcggcgagtcgactcagtggggcggcgagtcgatattcctcacttggagccggtgtcgtctcccgtcagacatctccaaatgttgaggcttcacggcttcttcccgaccttctctcttgacgccgatctcttcgcgtttaatcccgatttcgaaggaaaccccggcgtcaaaatcgtcaagtcatacgggtccaagtgttggactttaatcaaaggccgtacgaccttctacaactgctggagccccatagagagacaccctccgtcgtcgttcactgtgcttggcaatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

159

Amino Acids

18.27

Weight (kDa)

10.39

Isoelectric Point (pI)

81.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccI	GTMKAC	2 cut(s)	79, 195
AccII	CGCG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	4 cut(s)	38, 41, 187, 208
AcsI	RAATTY	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	62
AcyI	GRCGYC	3 cut(s)	76, 306, 351
AfaI	GTAC	2 cut(s)	174, 406
AfiI	CCNNNNNNNGG	2 cut(s)	62, 384
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
Alw26I	GTCTC	2 cut(s)	249, 433
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	20, 95
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	375
AxyI	CCTNAGG	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	62, 93
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	295, 387
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	249, 433
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	3 cut(s)	41, 188, 209
BlsI	GCNGC	3 cut(s)	42, 189, 210
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	4 cut(s)	174, 234, 376, 428
BmrFI	CCNGG	1 cut(s)	348
BpiI	GAAGAC	2 cut(s)	62, 93
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	62
BsaHI	GRCGYC	3 cut(s)	76, 306, 351
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	2 cut(s)	98, 152
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 384
Bse118I	RCCGGY	1 cut(s)	235
Bse21I	CCTNAGG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	62, 384
BseMII	CTCAG	2 cut(s)	182, 213
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	4 cut(s)	99, 153, 236, 348
BsiWI	CGTACG	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	62, 384
BsmAI	GTCTC	2 cut(s)	249, 433
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	4 cut(s)	38, 41, 187, 208
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	181, 212
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	174, 234, 376, 428
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	3 cut(s)	76, 306, 351
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	3 cut(s)	76, 306, 351
BstBAI	YACGTR	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	168, 199
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	249, 433
BstMBI	GATC	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	62, 93
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	207, 459
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	375
CseI	GACGC	3 cut(s)	119, 314, 340
Csp6I	GTAC	2 cut(s)	173, 405
CviJI	RGCY	5 cut(s)	235, 274, 282, 402, 429
CviKI_1	RGCY	5 cut(s)	235, 274, 282, 402, 429
CviQI	GTAC	2 cut(s)	173, 405
DdeI	CTNAG	2 cut(s)	168, 199
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	249
FaiI	YATR	2 cut(s)	370, 434
FblI	GTMKAC	2 cut(s)	79, 195
Fnu4HI	GCNGC	3 cut(s)	41, 188, 209
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	41, 188, 209
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	41, 188, 209
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	4 cut(s)	99, 153, 236, 348
HgaI	GACGC	3 cut(s)	119, 314, 340
Hin1I	GRCGYC	3 cut(s)	76, 306, 351
HincII	GTYRAC	2 cut(s)	80, 196
HindII	GTYRAC	2 cut(s)	80, 196
HinfI	GANTC	5 cut(s)	156, 181, 192, 197, 213
HpaII	CCGG	4 cut(s)	99, 153, 236, 348
HphI	GGTGA	2 cut(s)	20, 95
Hpy166II	GTNNAC	3 cut(s)	80, 196, 459
Hpy188I	TCNGA	2 cut(s)	57, 254
Hpy188III	TCNNGA	4 cut(s)	153, 289, 302, 329
Hpy8I	GTNNAC	3 cut(s)	80, 196, 459
Hpy99I	CGWCG	5 cut(s)	78, 81, 113, 454, 457
HpyAV	CCTTC	3 cut(s)	304, 332, 421
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	3 cut(s)	61, 76, 90
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	168, 199
HpySE526I	ACGT	3 cut(s)	61, 76, 90
Hsp92I	GRCGYC	3 cut(s)	76, 306, 351
Kpn2I	TCCGGA	1 cut(s)	152
KpnI	GGTACC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	232, 426
LpnPI	CCDG	6 cut(s)	112, 155, 166, 249, 361, 409
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	3 cut(s)	61, 76, 90
MaeIII	GTNAC	2 cut(s)	26, 101
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	4 cut(s)	62, 98, 277, 307
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	4 cut(s)	150, 191, 201, 222
MmeI	TCCRAC	2 cut(s)	80, 365
MnlI	CCTC	6 cut(s)	59, 116, 177, 234, 264, 456
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	324, 392
MspI	CCGG	4 cut(s)	99, 153, 236, 348
MspR9I	CCNGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	320
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	310
NlaIV	GGNNCC	4 cut(s)	174, 234, 376, 428
NmuCI	GTSAC	2 cut(s)	26, 101
NspV	TTCGAA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	181
Pfl23II	CGTACG	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	42, 189, 210
PleI	GAGTC	4 cut(s)	150, 191, 200, 221
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
PpsI	GAGTC	4 cut(s)	150, 191, 200, 221
Ppu21I	YACGTR	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	101
PspLI	CGTACG	1 cut(s)	404
PspN4I	GGNNCC	4 cut(s)	174, 234, 376, 428
PspPI	GGNCC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	174, 406
RsaNI	GTAC	2 cut(s)	173, 405
SalI	GTCGAC	2 cut(s)	78, 194
SaqAI	TTAA	2 cut(s)	324, 392
SatI	GCNGC	3 cut(s)	41, 188, 209
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	4 cut(s)	150, 191, 201, 222
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	8 cut(s)	64, 70, 79, 93, 108, 174, 296, 413
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	4 cut(s)	38, 41, 187, 208
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	3 cut(s)	64, 79, 93
TaqI	TCGA	6 cut(s)	73, 79, 108, 195, 216, 336
TasI	AATT	1 cut(s)	122
TauI	GCSGC	3 cut(s)	43, 190, 211
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	324, 392
Tru9I	TTAA	2 cut(s)	324, 392
TscAI	CASTG	2 cut(s)	207, 466
TseFI	GTSAC	2 cut(s)	26, 101
Tsp45I	GTSAC	2 cut(s)	26, 101
TspGWI	ACGGA	2 cut(s)	25, 438
TspRI	CASTG	2 cut(s)	207, 466
Van91I	CCANNNNNTGG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	79, 195
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.