Rmu_sc0000308.1_g000067

WD40-like Beta Propeller Repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000308.1
Physical Location & Seq
Reverse (-)
321679 .. 328477
6799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000308.1_g000067.1.cds

Sequence Viewer

Length: 1254 bp
atgtcacctctttatcagaaccgttgcaaattaattaaagagagactttatatcagccttcgatcagatcaacgatgtagagggatcgagagagatctagagtctctgacccggtattgcgacccttacccgagggccgagggcgagacccggtcgtattctcacagtcaggccatctaccggaggcggaacacctgcgttagcttcgaatccttgacgccgacgtcttcccgatctcagattgtccattcaaatacggacgacgaaggtacaaagctagacagcttaaagctttcacggcggttctccaactttttccggcgactccggctacagattgagctgcatttgtcttcaccggcgagcccgcgtcgttggtcgtgcgtggcagatctcagggtctgtttggtggtggtaaaggtttcgagaggatccgcttgtctaggatcttggtggctgggtcttggtgctgtgaatcgaggcaaatcagtcgtaggttcgtcggactggtaccgccgtgattggggtttggtgctgcttctgaggatggctgcctggggtggacgacccccatacagggcggagacggtagcagcgacaggctggcggcgccatgatgctcaggccagcatccttgcttgggtttgggcctctgggcctgggcttggatcaaatgggcctaatctctcttgggcctatttaactcctattggcttaatattacggcgctgtggtatacccattcgggtcgccacagagaagtgggcttgggtcattgggccgctccagcttgggctagttgagtctgctacagttgctttggacaagaagagcaagaccaacctgttgctgaggttgttggctcctgaagaggctaaggacggcaagctctacctcatctcagctcacgaacagcccgatcggtttttcaagagctggtctgctctctactccactgagcttgatgatcagaacgaaaagaaaaccaccagattgactccacccgggtccgtcgattacagtctgaccatttgtctctcggcgagttcgtcgccgtcgcttcttatggctctcgtccctgggacggcgagtttcactagcttaatactgacatcgtcgtcttccgagcttcacaacccggaaagcgtgtggtggactgtgagcgtggtgggttgtccgcctggtccgacgattccgtcatctactttcatcgctaagacgacgacggctggtgaaacccgatttctctcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

46.41

Weight (kDa)

9.65

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
AasI GACNNNNNNGTC 3 cut(s) 223, 1117, 1195
AatII GACGTC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 203
Acc65I GGTACC 1 cut(s) 510
AccB1I GGYRCC 2 cut(s) 510, 609
AccBSI CCGCTC 1 cut(s) 784
AccI GTMKAC 1 cut(s) 736
AccII CGCG 1 cut(s) 370
AciI CCGC 9 cut(s) 187, 301, 368, 435, 514, 581, 607, 782, 1178
AclWI GGATC 5 cut(s) 92, 426, 439, 454, 676
AcuI CTGAAG 1 cut(s) 888
AcyI GRCGYC 3 cut(s) 218, 224, 610
AfaI GTAC 2 cut(s) 271, 512
AfiI CCNNNNNNNGG 7 cut(s) 180, 523, 576, 577, 640, 665, 1084
AgsI TTSAA 2 cut(s) 252, 931
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 4 cut(s) 554, 658, 1078, 1180
Alw26I GTCTC 5 cut(s) 37, 108, 140, 578, 1040
AlwI GGATC 5 cut(s) 92, 426, 439, 454, 676
AlwNI CAGNNNCTG 1 cut(s) 402
Ama87I CYCGRG 2 cut(s) 130, 1004
AoxI GGCC 8 cut(s) 135, 171, 624, 648, 656, 677, 693, 779
ApeKI GCWGC 4 cut(s) 343, 535, 551, 593
AseI ATTAAT 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 612, 729
AspS9I GGNCC 8 cut(s) 135, 648, 656, 677, 693, 779, 1008, 1184
AsuC2I CCSGG 5 cut(s) 112, 151, 1005, 1006, 1139
AsuHPI GGTGA 2 cut(s) 348, 1244
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 2 cut(s) 130, 1004
AvaII GGWCC 2 cut(s) 1008, 1184
BaeI ACNNNNGTAYC 2 cut(s) 502, 535
BamHI GGATCC 1 cut(s) 431
BanI GGYRCC 2 cut(s) 510, 609
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 3 cut(s) 219, 345, 1113
BbvCI CCTCAGC 1 cut(s) 851
BbvI GCAGC 4 cut(s) 330, 522, 538, 605
BccI CCATC 2 cut(s) 182, 541
BceAI ACGGC 7 cut(s) 314, 501, 740, 898, 1039, 1101, 1242
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 4 cut(s) 556, 660, 1080, 1182
BclI TGATCA 1 cut(s) 967
BcnI CCSGG 5 cut(s) 112, 151, 1005, 1006, 1139
BcoDI GTCTC 5 cut(s) 37, 108, 140, 578, 1040
BfaI CTAG 5 cut(s) 98, 278, 443, 797, 1098
BfmI CTRYAG 2 cut(s) 332, 810
BfoI RGCGCY 2 cut(s) 613, 730
BfuAI ACCTGC 1 cut(s) 203
BglII AGATCT 2 cut(s) 94, 391
BisI GCNGC 6 cut(s) 344, 536, 552, 594, 608, 782
BlsI GCNGC 6 cut(s) 345, 537, 553, 595, 609, 783
Bme1390I CCNGG 9 cut(s) 112, 151, 556, 660, 1005, 1006, 1080, 1139, 1182
Bme18I GGWCC 2 cut(s) 1008, 1184
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmeT110I CYCGRG 2 cut(s) 130, 1004
BmgT120I GGNCC 8 cut(s) 135, 648, 656, 677, 693, 779, 1008, 1184
BmiI GGNNCC 5 cut(s) 433, 512, 611, 864, 1009
BmrFI CCNGG 9 cut(s) 112, 151, 556, 660, 1005, 1006, 1080, 1139, 1182
BmsI GCATC 2 cut(s) 607, 639
BpiI GAAGAC 3 cut(s) 219, 345, 1113
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 3 cut(s) 621, 851, 876
Bpu14I TTCGAA 1 cut(s) 207
BpuMI CCSGG 5 cut(s) 112, 151, 1005, 1006, 1139
BsaHI GRCGYC 3 cut(s) 218, 224, 610
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 7 cut(s) 131, 138, 555, 659, 1004, 1078, 1079
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 523, 576, 577, 640, 665, 1084
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 512
BseBI CCWGG 4 cut(s) 556, 660, 1080, 1182
BseDI CCNNGG 7 cut(s) 131, 138, 555, 659, 1004, 1078, 1079
BseGI GGATG 2 cut(s) 552, 630
BseLI CCNNNNNNNGG 7 cut(s) 180, 523, 576, 577, 640, 665, 1084
BseMII CTCAG 7 cut(s) 251, 409, 533, 635, 842, 915, 948
BseNI ACTGG 1 cut(s) 512
BseXI GCAGC 4 cut(s) 330, 522, 538, 605
BseYI CCCAGC 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 370
Bsh1285I CGRYCG 2 cut(s) 155, 922
BshFI GGCC 8 cut(s) 137, 173, 626, 650, 658, 679, 695, 781
BshNI GGYRCC 2 cut(s) 510, 609
BsiEI CGRYCG 2 cut(s) 155, 922
BsiHKCI CYCGRG 2 cut(s) 130, 1004
BsiSI CCGG 8 cut(s) 112, 151, 181, 319, 328, 359, 1005, 1139
BslFI GGGAC 2 cut(s) 1061, 1096
BslI CCNNNNNNNGG 7 cut(s) 180, 523, 576, 577, 640, 665, 1084
BsmAI GTCTC 5 cut(s) 37, 108, 140, 578, 1040
BsmBI CGTCTC 1 cut(s) 578
BsmFI GGGAC 2 cut(s) 1061, 1096
BsnI GGCC 8 cut(s) 137, 173, 626, 650, 658, 679, 695, 781
Bso31I GGTCTC 1 cut(s) 140
BsoBI CYCGRG 2 cut(s) 130, 1004
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 368
BspACI CCGC 9 cut(s) 187, 301, 368, 435, 514, 581, 607, 782, 1178
BspANI GGCC 8 cut(s) 137, 173, 626, 650, 658, 679, 695, 781
BspCNI CTCAG 7 cut(s) 250, 408, 534, 634, 843, 914, 949
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 5 cut(s) 433, 512, 611, 864, 1009
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 5 cut(s) 92, 426, 439, 454, 676
BspQI GCTCTTC 1 cut(s) 824
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 2 cut(s) 510, 609
BspTNI GGTCTC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 784
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 7 cut(s) 131, 138, 555, 659, 1004, 1078, 1079
BssNAI GTATAC 1 cut(s) 737
BssNI GRCGYC 3 cut(s) 218, 224, 610
Bst1107I GTATAC 1 cut(s) 737
Bst2UI CCWGG 4 cut(s) 556, 660, 1080, 1182
Bst4CI ACNGT 6 cut(s) 23, 167, 589, 814, 1022, 1159
Bst6I CTCTTC 2 cut(s) 824, 864
BstACI GRCGYC 3 cut(s) 218, 224, 610
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 5 cut(s) 364, 368, 605, 628, 887
BstDEI CTNAG 9 cut(s) 237, 395, 542, 621, 851, 876, 901, 957, 1215
BstF5I GGATG 2 cut(s) 552, 630
BstFNI CGCG 1 cut(s) 370
BstH2I RGCGCY 2 cut(s) 613, 730
BstHHI GCGC 2 cut(s) 612, 729
BstMAI GTCTC 5 cut(s) 37, 108, 140, 578, 1040
BstMCI CGRYCG 2 cut(s) 155, 922
BstMWI GCNNNNNNNGC 5 cut(s) 298, 328, 609, 787, 815
BstNI CCWGG 4 cut(s) 556, 660, 1080, 1182
BstSCI CCNGG 9 cut(s) 110, 149, 554, 658, 1003, 1004, 1078, 1137, 1180
BstSFI CTRYAG 2 cut(s) 332, 810
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 4 cut(s) 330, 522, 538, 605
BstV2I GAAGAC 3 cut(s) 219, 345, 1113
BstX2I RGATCY 4 cut(s) 94, 391, 431, 446
BstYI RGATCY 4 cut(s) 94, 391, 431, 446
BstZ17I GTATAC 1 cut(s) 737
BsuRI GGCC 8 cut(s) 137, 173, 626, 650, 658, 679, 695, 781
BtgZI GCGATG 1 cut(s) 1195
BtsCI GGATG 2 cut(s) 552, 630
BtsIMutI CAGTG 1 cut(s) 954
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 5 cut(s) 364, 368, 605, 628, 887
CaiI CAGNNNCTG 1 cut(s) 402
CfoI GCGC 2 cut(s) 612, 729
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 8 cut(s) 135, 648, 656, 677, 693, 779, 1008, 1184
Cfr9I CCCGGG 1 cut(s) 1004
CseI GACGC 2 cut(s) 226, 359
Csp6I GTAC 2 cut(s) 270, 511
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
CviAII CATG 1 cut(s) 614
CviQI GTAC 2 cut(s) 270, 511
DdeI CTNAG 9 cut(s) 237, 395, 542, 621, 851, 876, 901, 957, 1215
DinI GGCGCC 1 cut(s) 611
DrdI GACNNNNNNGTC 3 cut(s) 223, 1117, 1195
DriI GACNNNNNGTC 1 cut(s) 1032
DseDI GACNNNNNNGTC 3 cut(s) 223, 1117, 1195
Eam1104I CTCTTC 2 cut(s) 824, 864
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 2 cut(s) 824, 864
EciI GGCGGA 3 cut(s) 202, 596, 1167
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 1008, 1184
Eco57I CTGAAG 1 cut(s) 888
Eco88I CYCGRG 2 cut(s) 130, 1004
EcoRII CCWGG 4 cut(s) 554, 658, 1078, 1180
EcoT38I GRGCYC 1 cut(s) 368
EgeI GGCGCC 1 cut(s) 611
EheI GGCGCC 1 cut(s) 611
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 1 cut(s) 617
FaiI YATR 5 cut(s) 51, 574, 615, 737, 1067
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 2 cut(s) 1061, 1096
FatI CATG 1 cut(s) 613
FauI CCCGC 1 cut(s) 375
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 6 cut(s) 344, 536, 552, 594, 608, 782
FokI GGATG 2 cut(s) 559, 617
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 6 cut(s) 344, 536, 552, 594, 608, 782
FspBI CTAG 5 cut(s) 98, 278, 443, 797, 1098
GlaI GCGC 2 cut(s) 611, 728
GluI GCNGC 6 cut(s) 344, 536, 552, 594, 608, 782
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 2 cut(s) 613, 730
HaeIII GGCC 8 cut(s) 137, 173, 626, 650, 658, 679, 695, 781
HapII CCGG 8 cut(s) 112, 151, 181, 319, 328, 359, 1005, 1139
HgaI GACGC 2 cut(s) 226, 359
HhaI GCGC 2 cut(s) 612, 729
Hin1I GRCGYC 3 cut(s) 218, 224, 610
Hin1II CATG 1 cut(s) 617
Hin6I GCGC 2 cut(s) 610, 727
HinP1I GCGC 2 cut(s) 610, 727
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 7 cut(s) 101, 209, 324, 475, 803, 997, 1192
HpaII CCGG 8 cut(s) 112, 151, 181, 319, 328, 359, 1005, 1139
HphI GGTGA 2 cut(s) 348, 1244
Hpy166II GTNNAC 3 cut(s) 563, 737, 1155
Hpy188III TCNNGA 8 cut(s) 88, 98, 231, 426, 866, 908, 931, 1251
Hpy8I GTNNAC 3 cut(s) 563, 737, 1155
HpyAV CCTTC 2 cut(s) 68, 260
HpyCH4III ACNGT 6 cut(s) 23, 167, 589, 814, 1022, 1159
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 27, 346
HpyF10VI GCNNNNNNNGC 5 cut(s) 298, 328, 609, 787, 815
HpyF3I CTNAG 9 cut(s) 237, 395, 542, 621, 851, 876, 901, 957, 1215
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 3 cut(s) 218, 224, 610
Hsp92II CATG 1 cut(s) 617
HspAI GCGC 2 cut(s) 610, 727
KasI GGCGCC 1 cut(s) 609
KpnI GGTACC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 967
LguI GCTCTTC 1 cut(s) 824
LmnI GCTCC 2 cut(s) 789, 868
Lsp1109I GCAGC 4 cut(s) 330, 522, 538, 605
LweI GCATC 2 cut(s) 607, 639
MaeI CTAG 5 cut(s) 98, 278, 443, 797, 1098
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 3
MbiI CCGCTC 1 cut(s) 784
MboII GAAGA 5 cut(s) 219, 345, 841, 881, 1113
MflI RGATCY 4 cut(s) 94, 391, 431, 446
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 29, 33
Mly113I GGCGCC 1 cut(s) 610
MlyI GAGTC 4 cut(s) 110, 318, 812, 991
MmeI TCCRAC 3 cut(s) 333, 483, 1211
MseI TTAA 6 cut(s) 32, 36, 287, 701, 716, 1103
MspI CCGG 8 cut(s) 112, 151, 181, 319, 328, 359, 1005, 1139
MspR9I CCNGG 9 cut(s) 112, 151, 556, 660, 1005, 1006, 1080, 1139, 1182
MvaI CCWGG 4 cut(s) 556, 660, 1080, 1182
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 298, 328, 609, 787, 815
NarI GGCGCC 1 cut(s) 610
NciI CCSGG 5 cut(s) 112, 151, 1005, 1006, 1139
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 5 cut(s) 433, 512, 611, 864, 1009
NmeAIII GCCGAG 2 cut(s) 163, 1019
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 1 cut(s) 207
PacI TTAATTAA 1 cut(s) 36
PaqCI CACCTGC 1 cut(s) 203
PasI CCCWGGG 1 cut(s) 1079
PciSI GCTCTTC 1 cut(s) 824
PcsI WCGNNNNNNNCGW 3 cut(s) 593, 915, 1046
PfeI GAWTC 3 cut(s) 209, 475, 1192
PflFI GACNNNGTC 2 cut(s) 151, 1114
PkrI GCNGC 6 cut(s) 345, 537, 553, 595, 609, 783
Ple19I CGATCG 1 cut(s) 922
PleI GAGTC 4 cut(s) 109, 318, 811, 991
PluTI GGCGCC 1 cut(s) 613
PpsI GAGTC 4 cut(s) 109, 318, 811, 991
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 4 cut(s) 554, 658, 1078, 1180
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 4 cut(s) 554, 658, 1078, 1180
PspN4I GGNNCC 5 cut(s) 433, 512, 611, 864, 1009
PspPI GGNCC 8 cut(s) 135, 648, 656, 677, 693, 779, 1008, 1184
PstNI CAGNNNCTG 1 cut(s) 402
PsuI RGATCY 4 cut(s) 94, 391, 431, 446
PsyI GACNNNGTC 2 cut(s) 151, 1114
PvuI CGATCG 1 cut(s) 922
RsaI GTAC 2 cut(s) 271, 512
RsaNI GTAC 2 cut(s) 270, 511
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 6 cut(s) 32, 36, 287, 701, 716, 1103
SatI GCNGC 6 cut(s) 344, 536, 552, 594, 608, 782
Sau96I GGNCC 8 cut(s) 135, 648, 656, 677, 693, 779, 1008, 1184
SchI GAGTC 4 cut(s) 110, 318, 812, 991
ScrFI CCNGG 9 cut(s) 112, 151, 556, 660, 1005, 1006, 1080, 1139, 1182
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 2 cut(s) 607, 639
SfcI CTRYAG 2 cut(s) 332, 810
SfoI GGCGCC 1 cut(s) 611
SfuI TTCGAA 1 cut(s) 207
SgrAI CRCCGGYG 1 cut(s) 358
SinI GGWCC 2 cut(s) 1008, 1184
SmaI CCCGGG 1 cut(s) 1006
Sse9I AATT 2 cut(s) 29, 33
SsiI CCGC 9 cut(s) 187, 301, 368, 435, 514, 581, 607, 782, 1178
SspDI GGCGCC 1 cut(s) 609
SspI AATATT 1 cut(s) 720
SspMI CTAG 5 cut(s) 98, 278, 443, 797, 1098
StyD4I CCNGG 9 cut(s) 110, 149, 554, 658, 1003, 1004, 1078, 1137, 1180
TaaI ACNGT 6 cut(s) 23, 167, 589, 814, 1022, 1159
TaiI ACGT 1 cut(s) 227
TaqI TCGA 6 cut(s) 61, 87, 207, 425, 478, 1014
TasI AATT 2 cut(s) 29, 33
TauI GCSGC 2 cut(s) 610, 784
TfiI GAWTC 3 cut(s) 209, 475, 1192
Tru1I TTAA 6 cut(s) 32, 36, 287, 701, 716, 1103
Tru9I TTAA 6 cut(s) 32, 36, 287, 701, 716, 1103
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 343, 535, 551, 593
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 1198
TspGWI ACGGA 3 cut(s) 272, 1000, 1185
TspMI CCCGGG 1 cut(s) 1004
TspRI CASTG 1 cut(s) 961
Tth111I GACNNNGTC 2 cut(s) 151, 1114
VpaK11BI GGWCC 2 cut(s) 1008, 1184
VspI ATTAAT 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 97
XmaI CCCGGG 1 cut(s) 1004
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 5 cut(s) 98, 278, 443, 797, 1098
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.