Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

40151711 .. 40153611

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGATTTTATGTCTCACGTCTAAACACTAATGTGTTGAGGAAGGACGGCAAGCTCTACCTCATCTCAGCTCACGAACAGCCCAATCGGCTTTTCAAGAGCCGGTATACTCTCTACTCCACTGAGCTTGATGATCAGAACGAAAAGAAAACCACCCGATTGACTCCACCCGGGTCTGTCGATTACAGTCCGGCCGTTTCTCTCTCGGCGAGTTCGTTGCCGTCGCTTCTTACTGCTCTTGTCCCTGGGACAACGAGTTTCACCAGCTCAATACTGACATCATCATCTTCCGAGCTTCACAACCCGGAAAGCGTGTGGTGGTCTCCACTGCTTCACTCCAGCCGCCATGCACGACGGAAAAAGAATAATCATCGCCACTCGCCACCGCAACATGAAGTTCTGACACGTGGAAGTCTTCGACGTCGACACGAAGACGTTCCATCCGGTCACCTCAACGCTGAACCTGGATTTCCACCATTTCAACTCGTTCGTTTCTTCAGACTCCTAGTTCCTCGGGTACCACCGATTCCGCAGCGAGTTGACTCAGTGGGGCGGCGAGTCGATATTCCTCACCTGGAGCCGGTGTCGTCTCCCGTCAGATATCTCCAAATGCTGAGGCTTCACGGCTTCTTCCTGACCTTCTCTCCTGACGCCGATCTCTTTGCGTTTAATCCCGATTTCGAAGGAAACCCCGGCGTCAAAATCGTCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

239

Amino Acids

26.95

Weight (kDa)

10.14

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	2 cut(s)	107, 424
AciI	CCGC	4 cut(s)	343, 386, 530, 553
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	481
AcvI	CACGTG	1 cut(s)	407
AcyI	GRCGYC	3 cut(s)	421, 651, 696
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	97, 482
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	3 cut(s)	244, 463, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	55, 71, 127, 267, 295
AluI	AGCT	5 cut(s)	55, 71, 127, 267, 295
Alw26I	GTCTC	3 cut(s)	19, 327, 594
Ama87I	CYCGRG	2 cut(s)	170, 513
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	435
Asp718I	GGTACC	1 cut(s)	517
AsuC2I	CCSGG	4 cut(s)	171, 172, 305, 693
AsuHPI	GGTGA	3 cut(s)	253, 440, 563
AsuII	TTCGAA	1 cut(s)	681
AvaI	CYCGRG	2 cut(s)	170, 513
BanI	GGYRCC	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	407
BbsI	GAAGAC	2 cut(s)	407, 438
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	4 cut(s)	64, 179, 205, 640
BcgI	CGANNNNNNTGC	4 cut(s)	199, 233, 644, 678
BciT130I	CCWGG	3 cut(s)	246, 465, 575
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	4 cut(s)	171, 172, 305, 693
BcoDI	GTCTC	3 cut(s)	19, 327, 594
BfaI	CTAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	88
BisI	GCNGC	3 cut(s)	343, 533, 554
BlsI	GCNGC	3 cut(s)	344, 534, 555
Bme1390I	CCNGG	7 cut(s)	171, 172, 246, 305, 465, 575, 693
BmeT110I	CYCGRG	2 cut(s)	170, 513
BmgBI	CACGTC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	519, 579
BmrFI	CCNGG	7 cut(s)	171, 172, 246, 305, 465, 575, 693
BpiI	GAAGAC	2 cut(s)	407, 438
BpmI	CTGGAG	2 cut(s)	322, 596
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	681
BpuMI	CCSGG	4 cut(s)	171, 172, 305, 693
BsaAI	YACGTR	1 cut(s)	407
BsaHI	GRCGYC	3 cut(s)	421, 651, 696
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	5 cut(s)	170, 244, 245, 512, 691
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	569, 599, 628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	2 cut(s)	102, 580
BseBI	CCWGG	3 cut(s)	246, 465, 575
BseDI	CCNNGG	5 cut(s)	170, 244, 245, 512, 691
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	4 cut(s)	81, 114, 558, 605
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	170, 513
BsiSI	CCGG	7 cut(s)	103, 171, 191, 305, 444, 581, 693
BslFI	GGGAC	2 cut(s)	227, 262
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	3 cut(s)	19, 327, 594
BsmBI	CGTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	227, 262
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	2 cut(s)	170, 513
Bsp119I	TTCGAA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	133, 655
BspACI	CCGC	4 cut(s)	343, 386, 530, 553
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	4 cut(s)	80, 115, 557, 606
BspLI	GGNNCC	2 cut(s)	519, 579
BspT104I	TTCGAA	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	327
BsrFI	RCCGGY	2 cut(s)	102, 580
BssAI	RCCGGY	2 cut(s)	102, 580
BssECI	CCNNGG	5 cut(s)	170, 244, 245, 512, 691
BssMI	GATC	2 cut(s)	133, 655
BssNAI	GTATAC	1 cut(s)	108
BssNI	GRCGYC	3 cut(s)	421, 651, 696
Bst1107I	GTATAC	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	246, 465, 575
Bst4CI	ACNGT	1 cut(s)	188
BstACI	GRCGYC	3 cut(s)	421, 651, 696
BstBAI	YACGTR	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	67, 123, 544, 614
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	440
BstKTI	GATC	2 cut(s)	136, 658
BstMAI	GTCTC	3 cut(s)	19, 327, 594
BstMBI	GATC	2 cut(s)	133, 655
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	3 cut(s)	246, 465, 575
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	7 cut(s)	169, 170, 244, 303, 463, 573, 691
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	2 cut(s)	407, 438
BstZ17I	GTATAC	1 cut(s)	108
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	120, 326, 552
Cac8I	GCNNGC	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	102, 580
Cfr9I	CCCGGG	1 cut(s)	170
CseI	GACGC	2 cut(s)	659, 685
Csp6I	GTAC	1 cut(s)	518
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	347, 392
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	67, 123, 544, 614
DpnI	GATC	2 cut(s)	135, 657
DpnII	GATC	2 cut(s)	133, 655
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	602
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	481
Eco72I	CACGTG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	170, 513
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	244, 463, 573
EcoRV	GATATC	1 cut(s)	602
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	2 cut(s)	350, 395
FaiI	YATR	4 cut(s)	12, 108, 348, 393
FaqI	GGGAC	2 cut(s)	227, 262
FatI	CATG	2 cut(s)	346, 391
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	2 cut(s)	107, 424
Fnu4HI	GCNGC	3 cut(s)	343, 533, 554
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	3 cut(s)	343, 533, 554
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	3 cut(s)	343, 533, 554
GsuI	CTGGAG	2 cut(s)	322, 596
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	7 cut(s)	103, 171, 191, 305, 444, 581, 693
HgaI	GACGC	2 cut(s)	659, 685
Hin1I	GRCGYC	3 cut(s)	421, 651, 696
Hin1II	CATG	2 cut(s)	350, 395
HincII	GTYRAC	2 cut(s)	425, 541
HindII	GTYRAC	2 cut(s)	425, 541
HinfI	GANTC	5 cut(s)	163, 501, 526, 542, 558
HpaII	CCGG	7 cut(s)	103, 171, 191, 305, 444, 581, 693
HphI	GGTGA	3 cut(s)	253, 440, 563
Hpy166II	GTNNAC	3 cut(s)	108, 425, 541
Hpy188I	TCNGA	6 cut(s)	138, 292, 402, 500, 599, 716
Hpy188III	TCNNGA	5 cut(s)	74, 97, 634, 647, 674
Hpy8I	GTNNAC	3 cut(s)	108, 425, 541
Hpy99I	CGWCG	4 cut(s)	226, 357, 423, 426
HpyAV	CCTTC	3 cut(s)	37, 649, 677
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	4 cut(s)	19, 406, 421, 435
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	4 cut(s)	67, 123, 544, 614
HpySE526I	ACGT	4 cut(s)	19, 406, 421, 435
Hsp92I	GRCGYC	3 cut(s)	421, 651, 696
Hsp92II	CATG	2 cut(s)	350, 395
KpnI	GGTACC	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 655
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	4 cut(s)	19, 406, 421, 435
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	135, 657
MboI	GATC	2 cut(s)	133, 655
MboII	GAAGA	5 cut(s)	279, 407, 443, 487, 622
MlyI	GAGTC	4 cut(s)	157, 495, 536, 567
MnlI	CCTC	6 cut(s)	33, 71, 461, 522, 579, 609
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	7 cut(s)	103, 171, 191, 305, 444, 581, 693
MspR9I	CCNGG	7 cut(s)	171, 172, 246, 305, 465, 575, 693
MvaI	CCWGG	3 cut(s)	246, 465, 575
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	4 cut(s)	171, 172, 305, 693
NdeII	GATC	2 cut(s)	133, 655
NlaIII	CATG	2 cut(s)	350, 395
NlaIV	GGNNCC	2 cut(s)	519, 579
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	681
OliI	CACNNNNGTG	1 cut(s)	32
PasI	CCCWGGG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	344, 534, 555
PleI	GAGTC	4 cut(s)	157, 495, 536, 566
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	4 cut(s)	157, 495, 536, 566
Ppu21I	YACGTR	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	244, 463, 573
PspCI	CACGTG	1 cut(s)	407
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	3 cut(s)	244, 463, 573
PspN4I	GGNNCC	2 cut(s)	519, 579
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	3 cut(s)	343, 533, 554
Sau3AI	GATC	2 cut(s)	133, 655
SchI	GAGTC	4 cut(s)	157, 495, 536, 567
ScrFI	CCNGG	7 cut(s)	171, 172, 246, 305, 465, 575, 693
SfuI	TTCGAA	1 cut(s)	681
SmaI	CCCGGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	32
SsiI	CCGC	4 cut(s)	343, 386, 530, 553
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	7 cut(s)	169, 170, 244, 303, 463, 573, 691
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	4 cut(s)	22, 409, 424, 438
TaqI	TCGA	5 cut(s)	180, 418, 424, 561, 681
TauI	GCSGC	2 cut(s)	345, 556
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	3 cut(s)	127, 333, 552
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	370
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	3 cut(s)	127, 333, 552
XmaI	CCCGGG	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	107, 424
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	506
ZraI	GACGTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.