Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

50325545 .. 50325901

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCACGACGGAAAAAGAATAATCGTCACCACTCGCCGACGTCGACACGAAGACGTTCCATCCGGTCACCTCGACGCTGAACCCGGATTTCCACCATTTCAACCATTTCGTTTCTTCGGACTCCTAGTTCCTCAGGTACCACCGATTCCGCGGCAAGTCAACTCAGTGGGGCGGCGAGTCGATATTCCTCACCTGGAGTCAGTGTCGTCTTCCATCAAACATCTCCAAATGCTGAGGCTTCACGGCTTCTTCCCGACCTTCTCTCTTGACGCCGATCTCTTCGCGTTTAATCCCGATTTCGAAGGAAACCCTGAGTCAAAATCTTCAAGTCCGACGAGTCCAAGAGTTGGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

118

Amino Acids

13.3

Weight (kDa)

9.67

Isoelectric Point (pI)

74.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	2 cut(s)	151, 284
AciI	CCGC	3 cut(s)	149, 151, 172
AcyI	GRCGYC	2 cut(s)	40, 270
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	101, 327
AjnI	CCWGG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	54
Asp718I	GGTACC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	19, 59, 182
AsuII	TTCGAA	1 cut(s)	300
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	57, 201
BbvCI	CCTCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	67, 221
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	152, 173
BlsI	GCNGC	2 cut(s)	153, 174
Bme1390I	CCNGG	2 cut(s)	84, 194
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	84, 194
BpiI	GAAGAC	2 cut(s)	57, 201
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	40, 270
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	146, 177, 224, 303
Bsh1236I	CGCG	2 cut(s)	151, 284
BshNI	GGYRCC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	63, 84
BslI	CCNNNNNNNGG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	149, 151, 172
BspCNI	CTCAG	4 cut(s)	145, 176, 225, 304
BspFNI	CGCG	2 cut(s)	151, 284
BspLI	GGNNCC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	2 cut(s)	40, 270
Bst2UI	CCWGG	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	2 cut(s)	40, 270
BstBI	TTCGAA	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	132, 163, 233, 312
BstDSI	CCRYGG	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	151, 284
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	82, 192
BstUI	CGCG	2 cut(s)	151, 284
BstV2I	GAAGAC	2 cut(s)	57, 201
Bsu36I	CCTNAGG	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	171, 207
Cfr42I	CCGCGG	1 cut(s)	152
CseI	GACGC	2 cut(s)	83, 278
Csp6I	GTAC	1 cut(s)	137
CviJI	RGCY	2 cut(s)	238, 246
CviKI_1	RGCY	2 cut(s)	238, 246
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	4 cut(s)	132, 163, 233, 312
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	152, 173
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	152, 173
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	152, 173
GsuI	CTGGAG	1 cut(s)	215
HapII	CCGG	2 cut(s)	63, 84
HgaI	GACGC	2 cut(s)	83, 278
Hin1I	GRCGYC	2 cut(s)	40, 270
HincII	GTYRAC	2 cut(s)	44, 160
HindII	GTYRAC	2 cut(s)	44, 160
HinfI	GANTC	6 cut(s)	120, 145, 177, 197, 314, 337
HpaII	CCGG	2 cut(s)	63, 84
HphI	GGTGA	3 cut(s)	19, 59, 182
Hpy166II	GTNNAC	2 cut(s)	44, 160
Hpy188I	TCNGA	2 cut(s)	119, 333
Hpy188III	TCNNGA	3 cut(s)	253, 266, 293
Hpy8I	GTNNAC	2 cut(s)	44, 160
Hpy99I	CGWCG	5 cut(s)	11, 42, 45, 77, 337
HpyAV	CCTTC	2 cut(s)	268, 296
HpyCH4IV	ACGT	2 cut(s)	40, 54
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	4 cut(s)	132, 163, 233, 312
HpySE526I	ACGT	2 cut(s)	40, 54
Hsp92I	GRCGYC	2 cut(s)	40, 270
KpnI	GGTACC	1 cut(s)	140
KspI	CCGCGG	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	76, 97, 119, 179, 206, 324
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	40, 54
MaeIII	GTNAC	2 cut(s)	25, 65
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	6 cut(s)	62, 106, 201, 241, 271, 315
MlyI	GAGTC	5 cut(s)	114, 186, 206, 323, 346
MmeI	TCCRAC	2 cut(s)	328, 356
MnlI	CCTC	4 cut(s)	80, 141, 198, 228
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	288, 355
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	2 cut(s)	63, 84
MspR9I	CCNGG	2 cut(s)	84, 194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	151, 284
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	25, 65
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	153, 174
PleI	GAGTC	5 cut(s)	114, 185, 205, 322, 345
PpsI	GAGTC	5 cut(s)	114, 185, 205, 322, 345
Psp6I	CCWGG	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	288, 355
SatI	GCNGC	2 cut(s)	152, 173
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	5 cut(s)	114, 186, 206, 323, 346
ScrFI	CCNGG	2 cut(s)	84, 194
SetI	ASST	6 cut(s)	43, 57, 72, 138, 195, 260
Sfr303I	CCGCGG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	152
SsiI	CCGC	3 cut(s)	149, 151, 172
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	82, 192
TaiI	ACGT	2 cut(s)	43, 57
TaqI	TCGA	4 cut(s)	43, 72, 180, 300
TauI	GCSGC	2 cut(s)	154, 175
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	288, 355
Tru9I	TTAA	2 cut(s)	288, 355
TscAI	CASTG	2 cut(s)	171, 207
TseFI	GTSAC	2 cut(s)	25, 65
Tsp45I	GTSAC	2 cut(s)	25, 65
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	171, 207
Van91I	CCANNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	125
ZraI	GACGTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.