Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

22999941 .. 23004377

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCACTACGGAAAAAGAATAATCGTCGCCACTCACCGCCGCAACACGAAGTTCCGACACGTAGAGGTCTTCAACGTCGACACGAAGACGTTCCATCGGGTCACCTCGACACCGAACACGATTTCCACCATTTCAACCCGTTCGTTTCTCCGGACTCCTAGTTCATCCGGTACCACCGATTCCGCGGCTAGTCGACTCGGTGGGGCGGCAAGTCAATATTCCTCACCTAGAGCCGGTGTCGTCTCCCGTCGGACATCTCCAAATGCGAGGCTTCACGACTTCTTCCCGACCTTCTCTCCCGATGCCTATATCTTCGAGTTTAATCCCGATTTCGAAGGAAACCCGGCGTCAAAATTGGCAAGTTCGACGGGTCCAAGCGAGGCTGGTTTCCTCCGAAGCGCTTCCTCCAGCAGCAGTAAAACCCCCATTTCCTCAACCCTAGCGTCGCCTCCCTTGCCCGCCCAGCCACTCGCCGCAACGGCGGCCCTAACGCCCTCCTCCTCCTTCGCCGGACGACGACGACGAGCGCACCAAGAAGAAGCACAAGCTCATCCTCGGAATCAAACACCAACAGCAAAATCGCAAACCAACATTGTCGCCGTTCAATTCACGGCCCTACGGTTCGATTCCAATGCCAACGACGACAATCCGGACAAGATCGGATCCAATCATACCGTGATCATCGACCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

231

Amino Acids

24.89

Weight (kDa)

10.47

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	2 cut(s)	78, 193
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	2 cut(s)	150, 649
AciI	CCGC	8 cut(s)	37, 40, 183, 185, 206, 459, 474, 482
AclWI	GGATC	2 cut(s)	657, 670
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	73, 135, 605
AloI	GAACNNNNNNTCC	4 cut(s)	107, 139, 145, 177
AluBI	AGCT	1 cut(s)	548
AluI	AGCT	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	657, 670
Aor13HI	TCCGGA	2 cut(s)	150, 649
Aor51HI	AGCGCT	1 cut(s)	400
AoxI	GGCC	2 cut(s)	483, 612
ApeKI	GCWGC	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	89, 400
Asp718I	GGTACC	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	401, 529
AspS9I	GGNCC	3 cut(s)	371, 484, 613
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	26, 94, 216
AsuII	TTCGAA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	2 cut(s)	61, 92
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	3 cut(s)	495, 584, 627
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BclI	TGATCA	1 cut(s)	678
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	4 cut(s)	159, 189, 228, 440
BfoI	RGCGCY	1 cut(s)	402
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	6 cut(s)	40, 186, 207, 412, 474, 483
BlsI	GCNGC	6 cut(s)	41, 187, 208, 413, 475, 484
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	371, 484, 613
BmiI	GGNNCC	3 cut(s)	172, 372, 664
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	61, 92
BpmI	CTGGAG	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	183, 554
BsaWI	WCCGGW	3 cut(s)	150, 167, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	233
BseAI	TCCGGA	2 cut(s)	150, 649
BseDI	CCNNGG	2 cut(s)	183, 554
BseGI	GGATG	2 cut(s)	164, 550
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	487, 490
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	485, 614
BshNI	GGYRCC	1 cut(s)	170
BsiSI	CCGG	6 cut(s)	151, 168, 234, 344, 510, 650
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	485, 614
Bsp119I	TTCGAA	1 cut(s)	333
Bsp13I	TCCGGA	2 cut(s)	150, 649
Bsp143I	GATC	3 cut(s)	657, 662, 678
BspACI	CCGC	8 cut(s)	37, 40, 183, 185, 206, 459, 474, 482
BspANI	GGCC	2 cut(s)	485, 614
BspEI	TCCGGA	2 cut(s)	150, 649
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	3 cut(s)	172, 372, 664
BspPI	GGATC	2 cut(s)	657, 670
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	183, 554
BssMI	GATC	3 cut(s)	657, 662, 678
BssNI	GRCGYC	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	621, 676
BstACI	GRCGYC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	459
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	164, 550
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	2 cut(s)	401, 529
BstKTI	GATC	3 cut(s)	660, 665, 681
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	3 cut(s)	657, 662, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	454, 463, 479, 482
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	2 cut(s)	61, 92
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	485, 614
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	164, 550
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	401, 529
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	371, 484, 613
Cfr42I	CCGCGG	1 cut(s)	186
CseI	GACGC	2 cut(s)	336, 432
Csp6I	GTAC	1 cut(s)	171
CviJI	RGCY	8 cut(s)	188, 233, 271, 383, 466, 485, 548, 614
CviKI_1	RGCY	8 cut(s)	188, 233, 271, 383, 466, 485, 548, 614
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	3 cut(s)	659, 664, 680
DpnII	GATC	3 cut(s)	657, 662, 678
Eco47I	GGWCC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	400
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	2 cut(s)	309, 672
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	678
FblI	GTMKAC	2 cut(s)	78, 193
Fnu4HI	GCNGC	6 cut(s)	40, 186, 207, 412, 474, 483
FokI	GGATG	2 cut(s)	151, 537
Fsp4HI	GCNGC	6 cut(s)	40, 186, 207, 412, 474, 483
FspBI	CTAG	4 cut(s)	159, 189, 228, 440
GlaI	GCGC	2 cut(s)	400, 528
GluI	GCNGC	6 cut(s)	40, 186, 207, 412, 474, 483
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	485, 614
HapII	CCGG	6 cut(s)	151, 168, 234, 344, 510, 650
HgaI	GACGC	2 cut(s)	336, 432
HhaI	GCGC	2 cut(s)	401, 529
Hin1I	GRCGYC	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	399, 527
HinP1I	GCGC	2 cut(s)	399, 527
HincII	GTYRAC	2 cut(s)	79, 194
HindII	GTYRAC	2 cut(s)	79, 194
HinfI	GANTC	5 cut(s)	154, 179, 195, 559, 626
HpaII	CCGG	6 cut(s)	151, 168, 234, 344, 510, 650
HphI	GGTGA	3 cut(s)	26, 94, 216
Hpy166II	GTNNAC	2 cut(s)	79, 194
Hpy188I	TCNGA	5 cut(s)	56, 252, 395, 558, 662
Hpy188III	TCNNGA	6 cut(s)	151, 275, 286, 299, 326, 650
Hpy8I	GTNNAC	2 cut(s)	79, 194
Hpy99I	CGWCG	9 cut(s)	29, 80, 252, 370, 448, 519, 522, 525, 644
HpyAV	CCTTC	3 cut(s)	301, 329, 514
HpyCH4III	ACNGT	2 cut(s)	621, 676
HpyCH4IV	ACGT	3 cut(s)	60, 75, 89
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	454, 463, 479, 482
HpySE526I	ACGT	3 cut(s)	60, 75, 89
Hsp92I	GRCGYC	1 cut(s)	347
HspAI	GCGC	2 cut(s)	399, 527
Kpn2I	TCCGGA	2 cut(s)	150, 649
KpnI	GGTACC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	678
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	657, 662, 678
LpnPI	CCDG	9 cut(s)	164, 181, 247, 357, 369, 421, 476, 523, 663
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	159, 189, 228, 440
MaeII	ACGT	3 cut(s)	60, 75, 89
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	659, 664, 680
MboI	GATC	3 cut(s)	657, 662, 678
MboII	GAAGA	5 cut(s)	61, 97, 274, 304, 548
MflI	RGATCY	1 cut(s)	662
MluCI	AATT	2 cut(s)	353, 605
MlyI	GAGTC	2 cut(s)	148, 189
MmeI	TCCRAC	2 cut(s)	79, 230
MroI	TCCGGA	2 cut(s)	150, 649
MroXI	GAANNNNTTC	2 cut(s)	89, 400
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	6 cut(s)	151, 168, 234, 344, 510, 650
MspR9I	CCNGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	454, 463, 479, 482
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	3 cut(s)	657, 662, 678
NlaIV	GGNNCC	3 cut(s)	172, 372, 664
NmuCI	GTSAC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	89, 400
PfeI	GAWTC	3 cut(s)	179, 559, 626
PkrI	GCNGC	6 cut(s)	41, 187, 208, 413, 475, 484
PleI	GAGTC	2 cut(s)	148, 189
PpsI	GAGTC	2 cut(s)	148, 189
Ppu21I	YACGTR	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	462
PspN4I	GGNNCC	3 cut(s)	172, 372, 664
PspPI	GGNCC	3 cut(s)	371, 484, 613
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SacII	CCGCGG	1 cut(s)	186
SalI	GTCGAC	2 cut(s)	77, 192
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	6 cut(s)	40, 186, 207, 412, 474, 483
Sau3AI	GATC	3 cut(s)	657, 662, 678
Sau96I	GGNCC	3 cut(s)	371, 484, 613
SchI	GAGTC	2 cut(s)	148, 189
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	9 cut(s)	63, 69, 78, 92, 107, 229, 293, 550, 690
SfaNI	GCATC	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	333
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	353, 605
SsiI	CCGC	8 cut(s)	37, 40, 183, 185, 206, 459, 474, 482
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	4 cut(s)	159, 189, 228, 440
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	621, 676
TaiI	ACGT	3 cut(s)	63, 78, 92
TaqI	TCGA	9 cut(s)	78, 107, 193, 315, 333, 365, 624, 684, 690
TasI	AATT	2 cut(s)	353, 605
TauI	GCSGC	5 cut(s)	42, 188, 209, 476, 485
TfiI	GAWTC	3 cut(s)	179, 559, 626
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	78, 193
XmnI	GAANNNNTTC	2 cut(s)	89, 400
XspI	CTAG	4 cut(s)	159, 189, 228, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.