Pentatricopeptide repeat-containing protein At5g48730
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 817 |
| Acc65I | GGTACC | 1 cut(s) | 564 |
| AccB1I | GGYRCC | 1 cut(s) | 564 |
| AccBSI | CCGCTC | 2 cut(s) | 527, 723 |
| AccI | GTMKAC | 1 cut(s) | 585 |
| AccII | CGCG | 1 cut(s) | 80 |
| AciI | CCGC | 7 cut(s) | 164, 182, 185, 525, 723, 1044, 1294 |
| AclWI | GGATC | 3 cut(s) | 1090, 1103, 1313 |
| AcoI | YGGCCR | 2 cut(s) | 200, 1579 |
| AcsI | RAATTY | 3 cut(s) | 309, 1015, 1402 |
| AfaI | GTAC | 4 cut(s) | 5, 198, 566, 1023 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 717, 1588 |
| AgsI | TTSAA | 9 cut(s) | 36, 123, 249, 650, 662, 804, 1120, 1379, 1435 |
| Alw21I | GWGCWC | 1 cut(s) | 483 |
| Alw26I | GTCTC | 1 cut(s) | 356 |
| AlwI | GGATC | 3 cut(s) | 1090, 1103, 1313 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 328 |
| AoxI | GGCC | 5 cut(s) | 129, 200, 724, 1520, 1579 |
| ApeKI | GCWGC | 3 cut(s) | 463, 556, 578 |
| ApoI | RAATTY | 3 cut(s) | 309, 1015, 1402 |
| Asp718I | GGTACC | 1 cut(s) | 564 |
| AspLEI | GCGC | 2 cut(s) | 80, 82 |
| AspS9I | GGNCC | 3 cut(s) | 453, 1008, 1638 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 412, 1243, 1268 |
| AsuII | TTCGAA | 1 cut(s) | 540 |
| AvaII | GGWCC | 3 cut(s) | 453, 1008, 1638 |
| BaeGI | GKGCMC | 1 cut(s) | 45 |
| BalI | TGGCCA | 1 cut(s) | 1581 |
| BamHI | GGATCC | 1 cut(s) | 1095 |
| BanI | GGYRCC | 1 cut(s) | 564 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1371, 1403 |
| BauI | CACGAG | 1 cut(s) | 638 |
| BbsI | GAAGAC | 1 cut(s) | 770 |
| Bbv12I | GWGCWC | 1 cut(s) | 483 |
| BbvI | GCAGC | 3 cut(s) | 450, 565, 568 |
| BccI | CCATC | 5 cut(s) | 231, 905, 946, 1171, 1456 |
| BceAI | ACGGC | 5 cut(s) | 34, 151, 159, 172, 215 |
| BcoDI | GTCTC | 1 cut(s) | 356 |
| BfaI | CTAG | 2 cut(s) | 1130, 1355 |
| BfmI | CTRYAG | 2 cut(s) | 548, 824 |
| BfuAI | ACCTGC | 1 cut(s) | 817 |
| BisI | GCNGC | 5 cut(s) | 185, 464, 557, 579, 724 |
| BlpI | GCTNAGC | 1 cut(s) | 977 |
| BlsI | GCNGC | 5 cut(s) | 186, 465, 558, 580, 725 |
| BmcAI | AGTACT | 1 cut(s) | 1023 |
| Bme18I | GGWCC | 3 cut(s) | 453, 1008, 1638 |
| BmgT120I | GGNCC | 3 cut(s) | 453, 1008, 1638 |
| BmiI | GGNNCC | 4 cut(s) | 454, 566, 1097, 1640 |
| BmsI | GCATC | 5 cut(s) | 910, 1228, 1404, 1438, 1457 |
| BpiI | GAAGAC | 1 cut(s) | 770 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 977 |
| Bpu14I | TTCGAA | 1 cut(s) | 540 |
| BpuEI | CTTGAG | 4 cut(s) | 335, 515, 773, 1514 |
| Bsa29I | ATCGAT | 1 cut(s) | 918 |
| BsaI | GGTCTC | 1 cut(s) | 356 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1240, 1265, 1270, 1295 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 717, 1588 |
| Bse1I | ACTGG | 2 cut(s) | 285, 1359 |
| BseCI | ATCGAT | 1 cut(s) | 918 |
| BseGI | GGATG | 4 cut(s) | 223, 1467, 1472, 1520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 717, 1588 |
| BseMII | CTCAG | 2 cut(s) | 305, 1016 |
| BseNI | ACTGG | 2 cut(s) | 285, 1359 |
| BsePI | GCGCGC | 1 cut(s) | 78 |
| BseRI | GAGGAG | 3 cut(s) | 219, 222, 374 |
| BseSI | GKGCMC | 1 cut(s) | 45 |
| BseXI | GCAGC | 3 cut(s) | 450, 565, 568 |
| BseYI | CCCAGC | 2 cut(s) | 1091, 1148 |
| BsgI | GTGCAG | 1 cut(s) | 869 |
| Bsh1236I | CGCG | 1 cut(s) | 80 |
| BshFI | GGCC | 5 cut(s) | 131, 202, 726, 1522, 1581 |
| BshNI | GGYRCC | 1 cut(s) | 564 |
| BshVI | ATCGAT | 1 cut(s) | 918 |
| BsiHKAI | GWGCWC | 1 cut(s) | 483 |
| BslFI | GGGAC | 1 cut(s) | 1624 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 717, 1588 |
| BsmAI | GTCTC | 1 cut(s) | 356 |
| BsmFI | GGGAC | 1 cut(s) | 1624 |
| BsnI | GGCC | 5 cut(s) | 131, 202, 726, 1522, 1581 |
| Bso31I | GGTCTC | 1 cut(s) | 356 |
| Bsp119I | TTCGAA | 1 cut(s) | 540 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 483 |
| Bsp143I | GATC | 2 cut(s) | 1095, 1305 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 977 |
| BspACI | CCGC | 7 cut(s) | 164, 182, 185, 525, 723, 1044, 1294 |
| BspANI | GGCC | 5 cut(s) | 131, 202, 726, 1522, 1581 |
| BspCNI | CTCAG | 2 cut(s) | 304, 1017 |
| BspDI | ATCGAT | 1 cut(s) | 918 |
| BspFNI | CGCG | 1 cut(s) | 80 |
| BspHI | TCATGA | 1 cut(s) | 1110 |
| BspLI | GGNNCC | 4 cut(s) | 454, 566, 1097, 1640 |
| BspMAI | CTGCAG | 1 cut(s) | 828 |
| BspMI | ACCTGC | 1 cut(s) | 817 |
| BspPI | GGATC | 3 cut(s) | 1090, 1103, 1313 |
| BspT104I | TTCGAA | 1 cut(s) | 540 |
| BspT107I | GGYRCC | 1 cut(s) | 564 |
| BspTNI | GGTCTC | 1 cut(s) | 356 |
| BsrBI | CCGCTC | 2 cut(s) | 527, 723 |
| BsrI | ACTGG | 2 cut(s) | 285, 1359 |
| BssHII | GCGCGC | 1 cut(s) | 78 |
| BssMI | GATC | 2 cut(s) | 1095, 1305 |
| BssNAI | GTATAC | 1 cut(s) | 586 |
| BssSI | CACGAG | 1 cut(s) | 638 |
| Bst1107I | GTATAC | 1 cut(s) | 586 |
| Bst2BI | CACGAG | 1 cut(s) | 638 |
| Bst4CI | ACNGT | 6 cut(s) | 69, 98, 196, 299, 478, 1426 |
| Bst6I | CTCTTC | 2 cut(s) | 109, 406 |
| BstBI | TTCGAA | 1 cut(s) | 540 |
| BstC8I | GCNNGC | 5 cut(s) | 80, 782, 824, 852, 1046 |
| BstDEI | CTNAG | 3 cut(s) | 291, 977, 1025 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 715 |
| BstF5I | GGATG | 4 cut(s) | 223, 1467, 1472, 1520 |
| BstFNI | CGCG | 1 cut(s) | 80 |
| BstHHI | GCGC | 2 cut(s) | 80, 82 |
| BstKTI | GATC | 2 cut(s) | 1098, 1308 |
| BstMAI | GTCTC | 1 cut(s) | 356 |
| BstMBI | GATC | 2 cut(s) | 1095, 1305 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 425 |
| BstSFI | CTRYAG | 2 cut(s) | 548, 824 |
| BstSLI | GKGCMC | 1 cut(s) | 45 |
| BstUI | CGCG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 3 cut(s) | 450, 565, 568 |
| BstV2I | GAAGAC | 1 cut(s) | 770 |
| BstX2I | RGATCY | 1 cut(s) | 1095 |
| BstYI | RGATCY | 1 cut(s) | 1095 |
| BstZ17I | GTATAC | 1 cut(s) | 586 |
| Bsu15I | ATCGAT | 1 cut(s) | 918 |
| BsuRI | GGCC | 5 cut(s) | 131, 202, 726, 1522, 1581 |
| BsuTUI | ATCGAT | 1 cut(s) | 918 |
| BtsCI | GGATG | 4 cut(s) | 223, 1467, 1472, 1520 |
| BtsI | GCAGTG | 3 cut(s) | 291, 504, 693 |
| BtsIMutI | CAGTG | 6 cut(s) | 278, 291, 504, 681, 693, 1431 |
| BveI | ACCTGC | 1 cut(s) | 817 |
| Cac8I | GCNNGC | 5 cut(s) | 80, 782, 824, 852, 1046 |
| CaiI | CAGNNNCTG | 1 cut(s) | 328 |
| CciI | TCATGA | 1 cut(s) | 1110 |
| CfoI | GCGC | 2 cut(s) | 80, 82 |
| Cfr13I | GGNCC | 3 cut(s) | 453, 1008, 1638 |
| ClaI | ATCGAT | 1 cut(s) | 918 |
| Csp6I | GTAC | 4 cut(s) | 4, 197, 565, 1022 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 948, 983 |
| CviAII | CATG | 9 cut(s) | 25, 127, 494, 604, 819, 1012, 1111, 1583, 1598 |
| CviQI | GTAC | 4 cut(s) | 4, 197, 565, 1022 |
| DdeI | CTNAG | 3 cut(s) | 291, 977, 1025 |
| DpnI | GATC | 2 cut(s) | 1097, 1307 |
| DpnII | GATC | 2 cut(s) | 1095, 1305 |
| DraI | TTTAAA | 1 cut(s) | 1263 |
| EaeI | YGGCCR | 2 cut(s) | 200, 1579 |
| Eam1104I | CTCTTC | 2 cut(s) | 109, 406 |
| EarI | CTCTTC | 2 cut(s) | 109, 406 |
| EciI | GGCGGA | 1 cut(s) | 153 |
| Eco31I | GGTCTC | 1 cut(s) | 356 |
| Eco47I | GGWCC | 3 cut(s) | 453, 1008, 1638 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 715 |
| EcoRI | GAATTC | 2 cut(s) | 1015, 1402 |
| EcoT22I | ATGCAT | 1 cut(s) | 1243 |
| FaeI | CATG | 9 cut(s) | 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601 |
| FaqI | GGGAC | 1 cut(s) | 1624 |
| FatI | CATG | 9 cut(s) | 24, 126, 493, 603, 818, 1011, 1110, 1582, 1597 |
| FauI | CCCGC | 1 cut(s) | 1037 |
| FauNDI | CATATG | 2 cut(s) | 838, 1348 |
| FblI | GTMKAC | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 5 cut(s) | 185, 464, 557, 579, 724 |
| FokI | GGATG | 4 cut(s) | 210, 1474, 1479, 1527 |
| Fsp4HI | GCNGC | 5 cut(s) | 185, 464, 557, 579, 724 |
| FspBI | CTAG | 2 cut(s) | 1130, 1355 |
| GlaI | GCGC | 2 cut(s) | 79, 81 |
| GluI | GCNGC | 5 cut(s) | 185, 464, 557, 579, 724 |
| GsaI | CCCAGC | 2 cut(s) | 1095, 1152 |
| HaeIII | GGCC | 5 cut(s) | 131, 202, 726, 1522, 1581 |
| HhaI | GCGC | 2 cut(s) | 80, 82 |
| Hin1II | CATG | 9 cut(s) | 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601 |
| Hin6I | GCGC | 2 cut(s) | 78, 80 |
| HinP1I | GCGC | 2 cut(s) | 78, 80 |
| HincII | GTYRAC | 2 cut(s) | 192, 679 |
| HindII | GTYRAC | 2 cut(s) | 192, 679 |
| HindIII | AAGCTT | 1 cut(s) | 1554 |
| HinfI | GANTC | 8 cut(s) | 289, 319, 501, 521, 686, 956, 1133, 1610 |
| HphI | GGTGA | 4 cut(s) | 134, 412, 1243, 1268 |
| Hpy166II | GTNNAC | 7 cut(s) | 179, 192, 586, 679, 793, 1209, 1364 |
| Hpy188I | TCNGA | 9 cut(s) | 294, 303, 324, 432, 865, 1086, 1300, 1408, 1629 |
| Hpy188III | TCNNGA | 4 cut(s) | 314, 384, 773, 1111 |
| Hpy8I | GTNNAC | 7 cut(s) | 179, 192, 586, 679, 793, 1209, 1364 |
| HpyAV | CCTTC | 8 cut(s) | 246, 255, 340, 659, 1373, 1477, 1582, 1613 |
| HpyCH4III | ACNGT | 6 cut(s) | 69, 98, 196, 299, 478, 1426 |
| HpyCH4IV | ACGT | 2 cut(s) | 588, 1390 |
| HpyCH4V | TGCA | 7 cut(s) | 263, 826, 836, 850, 947, 1189, 1241 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 425 |
| HpyF3I | CTNAG | 3 cut(s) | 291, 977, 1025 |
| HpySE526I | ACGT | 2 cut(s) | 588, 1390 |
| Hsp92II | CATG | 9 cut(s) | 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601 |
| HspAI | GCGC | 2 cut(s) | 78, 80 |
| KpnI | GGTACC | 1 cut(s) | 568 |
| Kzo9I | GATC | 2 cut(s) | 1095, 1305 |
| LmnI | GCTCC | 4 cut(s) | 303, 553, 720, 1504 |
| Lsp1109I | GCAGC | 3 cut(s) | 450, 565, 568 |
| LweI | GCATC | 5 cut(s) | 910, 1228, 1404, 1438, 1457 |
| MaeI | CTAG | 2 cut(s) | 1130, 1355 |
| MaeII | ACGT | 2 cut(s) | 588, 1390 |
| MaeIII | GTNAC | 5 cut(s) | 98, 286, 1216, 1321, 1531 |
| MalI | GATC | 2 cut(s) | 1097, 1307 |
| MbiI | CCGCTC | 2 cut(s) | 527, 723 |
| MboI | GATC | 2 cut(s) | 1095, 1305 |
| MboII | GAAGA | 8 cut(s) | 96, 231, 423, 451, 454, 457, 674, 775 |
| MfeI | CAATTG | 1 cut(s) | 1435 |
| MflI | RGATCY | 1 cut(s) | 1095 |
| MhlI | GDGCHC | 2 cut(s) | 45, 483 |
| MlsI | TGGCCA | 1 cut(s) | 1581 |
| MluCI | AATT | 6 cut(s) | 30, 309, 1015, 1374, 1402, 1435 |
| MluNI | TGGCCA | 1 cut(s) | 1581 |
| MlyI | GAGTC | 3 cut(s) | 283, 328, 530 |
| MmeI | TCCRAC | 1 cut(s) | 281 |
| Mox20I | TGGCCA | 1 cut(s) | 1581 |
| Mph1103I | ATGCAT | 1 cut(s) | 1243 |
| MscI | TGGCCA | 1 cut(s) | 1581 |
| MseI | TTAA | 5 cut(s) | 15, 29, 591, 1262, 1551 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1478 |
| Msp20I | TGGCCA | 1 cut(s) | 1581 |
| MspA1I | CMGCKG | 1 cut(s) | 1044 |
| MunI | CAATTG | 1 cut(s) | 1435 |
| MvnI | CGCG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 425 |
| NdeI | CATATG | 2 cut(s) | 838, 1348 |
| NdeII | GATC | 2 cut(s) | 1095, 1305 |
| NlaIII | CATG | 9 cut(s) | 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601 |
| NlaIV | GGNNCC | 4 cut(s) | 454, 566, 1097, 1640 |
| NmuCI | GTSAC | 4 cut(s) | 98, 286, 1216, 1321 |
| NsiI | ATGCAT | 1 cut(s) | 1243 |
| NspV | TTCGAA | 1 cut(s) | 540 |
| PagI | TCATGA | 1 cut(s) | 1110 |
| PauI | GCGCGC | 1 cut(s) | 78 |
| PfeI | GAWTC | 5 cut(s) | 501, 686, 956, 1133, 1610 |
| PkrI | GCNGC | 5 cut(s) | 186, 465, 558, 580, 725 |
| PleI | GAGTC | 3 cut(s) | 283, 327, 529 |
| PpsI | GAGTC | 3 cut(s) | 283, 327, 529 |
| PspFI | CCCAGC | 2 cut(s) | 1091, 1148 |
| PspN4I | GGNNCC | 4 cut(s) | 454, 566, 1097, 1640 |
| PspPI | GGNCC | 3 cut(s) | 453, 1008, 1638 |
| PstI | CTGCAG | 1 cut(s) | 828 |
| PstNI | CAGNNNCTG | 1 cut(s) | 328 |
| PsuI | RGATCY | 1 cut(s) | 1095 |
| PteI | GCGCGC | 1 cut(s) | 78 |
| RsaI | GTAC | 4 cut(s) | 5, 198, 566, 1023 |
| RsaNI | GTAC | 4 cut(s) | 4, 197, 565, 1022 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1478 |
| SaqAI | TTAA | 5 cut(s) | 15, 29, 591, 1262, 1551 |
| SatI | GCNGC | 5 cut(s) | 185, 464, 557, 579, 724 |
| Sau3AI | GATC | 2 cut(s) | 1095, 1305 |
| Sau96I | GGNCC | 3 cut(s) | 453, 1008, 1638 |
| SbfI | CCTGCAGG | 1 cut(s) | 828 |
| ScaI | AGTACT | 1 cut(s) | 1023 |
| SchI | GAGTC | 3 cut(s) | 283, 328, 530 |
| SdaI | CCTGCAGG | 1 cut(s) | 828 |
| SduI | GDGCHC | 2 cut(s) | 45, 483 |
| SfaNI | GCATC | 5 cut(s) | 910, 1228, 1404, 1438, 1457 |
| SfcI | CTRYAG | 2 cut(s) | 548, 824 |
| SfuI | TTCGAA | 1 cut(s) | 540 |
| SinI | GGWCC | 3 cut(s) | 453, 1008, 1638 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1478 |
| SmlI | CTYRAG | 4 cut(s) | 314, 530, 752, 1493 |
| SmoI | CTYRAG | 4 cut(s) | 314, 530, 752, 1493 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 828 |
| Sse9I | AATT | 6 cut(s) | 30, 309, 1015, 1374, 1402, 1435 |
| SsiI | CCGC | 7 cut(s) | 164, 182, 185, 525, 723, 1044, 1294 |
| SspMI | CTAG | 2 cut(s) | 1130, 1355 |
| TaaI | ACNGT | 6 cut(s) | 69, 98, 196, 299, 478, 1426 |
| TaiI | ACGT | 2 cut(s) | 591, 1393 |
| TaqI | TCGA | 5 cut(s) | 483, 540, 918, 1419, 1663 |
| TasI | AATT | 6 cut(s) | 30, 309, 1015, 1374, 1402, 1435 |
| TatI | WGTACW | 2 cut(s) | 3, 1021 |
| TauI | GCSGC | 2 cut(s) | 187, 726 |
| TfiI | GAWTC | 5 cut(s) | 501, 686, 956, 1133, 1610 |
| Tru1I | TTAA | 5 cut(s) | 15, 29, 591, 1262, 1551 |
| Tru9I | TTAA | 5 cut(s) | 15, 29, 591, 1262, 1551 |
| TscAI | CASTG | 6 cut(s) | 285, 291, 511, 688, 700, 1431 |
| TseFI | GTSAC | 4 cut(s) | 98, 286, 1216, 1321 |
| TseI | GCWGC | 3 cut(s) | 463, 556, 578 |
| Tsp45I | GTSAC | 4 cut(s) | 98, 286, 1216, 1321 |
| TspDTI | ATGAA | 4 cut(s) | 776, 1028, 1496, 1614 |
| TspRI | CASTG | 6 cut(s) | 285, 291, 511, 688, 700, 1431 |
| VpaK11BI | GGWCC | 3 cut(s) | 453, 1008, 1638 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 715 |
| XapI | RAATTY | 3 cut(s) | 309, 1015, 1402 |
| XmiI | GTMKAC | 1 cut(s) | 585 |
| XspI | CTAG | 2 cut(s) | 1130, 1355 |
| ZrmI | AGTACT | 1 cut(s) | 1023 |
| Zsp2I | ATGCAT | 1 cut(s) | 1243 |