pycom10g14080

Pentatricopeptide repeat-containing protein At5g48730

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
17479132 .. 17481774
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14080.3

Sequence Viewer

Length: 1668 bp
ATGTACTTTGGTCTTAATGACCTCATGTTAATTTCAAGTGTGCCCTTGCCGTTTTTCCTTTCTCAACTGTATCATAGCGCGCCCTTACTTTCTCACGGTCACTCTTCTCCACACACACATTCAATCATGGCCTCACTTCCTCACCCAACCCAACCACTTCCTCCGCCGTTTAGCCGTCCACCGCCGCCGTCAACTGTACGGCCACAAATGACACTCAATCCCCATCCTCCTCCTCCTTCTTCCCCTTCAACCAATACTAATGCAAACAAAACGACTTCACTGGCAGTGACTCAGAACAGTCGGAGCAAAATTCTTGAGAGTCAGAAGCTGAAAGATAAGGAGGCGAAGGAGAGGAAAGAGGAGACCAACAACAAAATAGCTTCCAGAAAAGCAATCTCGGTGATACTGCGAAGAGAAGCCACCAAAGCTCTGATTGAGAAGAAGAAGAAAGGGTCCAAGAGGCTGCTTCCAAAAACCGTGCTCGAAGCCCTCCATGAGAGAATCACTGCTCTGCGTTGGGAGTCCGCTCTCAAGGTTTTCGAACTACTACAGGAGCAGCTCTGGTACCGACCTAATGCTGCTGTATACGTTAAGCTAATCGTCATGCTTGGAAAATGTAAGCAACCAGAAAAAGCCCACGAGCTTTTTGAAGCTATGATTGAAGAAGGCTGTGATGTCAACACTGAATCGCACACTGCTCTTGTATCTGCCTATGGTAGGAGCGGCCTCTTTCACAAAGCATTTTCCCTCCTTGAGCAGATGAAGACTACTCCTGACTGCCAGCCTGATGTCCACACTTATTCAATCCTCATAAAATCATGCCTGCAGGTTTTTGCATATGACAAAGTGCAGGCTCTACTTTCGGATATGGAAGTTCAGGGGATAAGACCCAACACCATCACATATAATACCCTCATCGATGCCTATGGCAAATCTAAAAGATTTGCAGAGATGGAATCAACACTTGTGGAAATGCTTAGCGAACAGGATTGTGAGCCTGATGTTTGGACCATGAATTCAGTACTGAGAGCCTTTGGCAACAGCGGGCAAATAGAAACAATGGAAAAGTGTTTTGAGAGGTTTCAGAGTGCTGGGATCCAAGCCAACATCATGACTTTCAACATTCTCCTAGATTCCTATGGAAAAGCTGGGAAATATGAGAAAATGAGTGCTGTGATGGAATATATGCAGAAATACCATTATTCGTGGACGATTGTGACATATAATGTGGTGATAGATGCATTTGGGAGGGCTGGTGATTTAAAACAAATGGAGTATCTGTTTAGGCTAATGCGGTCAGAGAGGATCAAACCAAGCTGTGTCACACTTTGCTCACTCGTAAGGGCATATGGTCTAGCCAGTAAACCTGAAAAAATTGAAGGTGTTTTACGTTTTGTGGAGAATTCAGATGTGATGCTCGATACAGTGTTTTTCAATTGTCTGGTTGATGCTTATGGGAGGATGGGATGCTTCACAGAAATGAAGGGGGTGCTTGAGATAATGGAGCAAAAAGGATGTAGGCCAGACAAAGTTACATATAGAACTATGATTAAAGCTTATTCCACCAACAAGATGATTGGCCATGTGAAGGAACTCCATGAACTTATGGAATCAGCAGAAGGAAGTCAGATGATTTGGTCCCAGAGAGAAAAACCTGACTTTCGATGA

Protein Analysis

556

Amino Acids

63.09

Weight (kDa)

8.8

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 817
Acc65I GGTACC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 564
AccBSI CCGCTC 2 cut(s) 527, 723
AccI GTMKAC 1 cut(s) 585
AccII CGCG 1 cut(s) 80
AciI CCGC 7 cut(s) 164, 182, 185, 525, 723, 1044, 1294
AclWI GGATC 3 cut(s) 1090, 1103, 1313
AcoI YGGCCR 2 cut(s) 200, 1579
AcsI RAATTY 3 cut(s) 309, 1015, 1402
AfaI GTAC 4 cut(s) 5, 198, 566, 1023
AfiI CCNNNNNNNGG 2 cut(s) 717, 1588
AgsI TTSAA 9 cut(s) 36, 123, 249, 650, 662, 804, 1120, 1379, 1435
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 3 cut(s) 1090, 1103, 1313
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 5 cut(s) 129, 200, 724, 1520, 1579
ApeKI GCWGC 3 cut(s) 463, 556, 578
ApoI RAATTY 3 cut(s) 309, 1015, 1402
Asp718I GGTACC 1 cut(s) 564
AspLEI GCGC 2 cut(s) 80, 82
AspS9I GGNCC 3 cut(s) 453, 1008, 1638
AsuHPI GGTGA 4 cut(s) 134, 412, 1243, 1268
AsuII TTCGAA 1 cut(s) 540
AvaII GGWCC 3 cut(s) 453, 1008, 1638
BaeGI GKGCMC 1 cut(s) 45
BalI TGGCCA 1 cut(s) 1581
BamHI GGATCC 1 cut(s) 1095
BanI GGYRCC 1 cut(s) 564
BarI GAAGNNNNNNTAC 2 cut(s) 1371, 1403
BauI CACGAG 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 3 cut(s) 450, 565, 568
BccI CCATC 5 cut(s) 231, 905, 946, 1171, 1456
BceAI ACGGC 5 cut(s) 34, 151, 159, 172, 215
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 1130, 1355
BfmI CTRYAG 2 cut(s) 548, 824
BfuAI ACCTGC 1 cut(s) 817
BisI GCNGC 5 cut(s) 185, 464, 557, 579, 724
BlpI GCTNAGC 1 cut(s) 977
BlsI GCNGC 5 cut(s) 186, 465, 558, 580, 725
BmcAI AGTACT 1 cut(s) 1023
Bme18I GGWCC 3 cut(s) 453, 1008, 1638
BmgT120I GGNCC 3 cut(s) 453, 1008, 1638
BmiI GGNNCC 4 cut(s) 454, 566, 1097, 1640
BmsI GCATC 5 cut(s) 910, 1228, 1404, 1438, 1457
BpiI GAAGAC 1 cut(s) 770
Bpu1102I GCTNAGC 1 cut(s) 977
Bpu14I TTCGAA 1 cut(s) 540
BpuEI CTTGAG 4 cut(s) 335, 515, 773, 1514
Bsa29I ATCGAT 1 cut(s) 918
BsaI GGTCTC 1 cut(s) 356
BsaXI ACNNNNNCTCC 4 cut(s) 1240, 1265, 1270, 1295
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 1588
Bse1I ACTGG 2 cut(s) 285, 1359
BseCI ATCGAT 1 cut(s) 918
BseGI GGATG 4 cut(s) 223, 1467, 1472, 1520
BseLI CCNNNNNNNGG 2 cut(s) 717, 1588
BseMII CTCAG 2 cut(s) 305, 1016
BseNI ACTGG 2 cut(s) 285, 1359
BsePI GCGCGC 1 cut(s) 78
BseRI GAGGAG 3 cut(s) 219, 222, 374
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 450, 565, 568
BseYI CCCAGC 2 cut(s) 1091, 1148
BsgI GTGCAG 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 5 cut(s) 131, 202, 726, 1522, 1581
BshNI GGYRCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 918
BsiHKAI GWGCWC 1 cut(s) 483
BslFI GGGAC 1 cut(s) 1624
BslI CCNNNNNNNGG 2 cut(s) 717, 1588
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 1624
BsnI GGCC 5 cut(s) 131, 202, 726, 1522, 1581
Bso31I GGTCTC 1 cut(s) 356
Bsp119I TTCGAA 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 45, 483
Bsp143I GATC 2 cut(s) 1095, 1305
Bsp1720I GCTNAGC 1 cut(s) 977
BspACI CCGC 7 cut(s) 164, 182, 185, 525, 723, 1044, 1294
BspANI GGCC 5 cut(s) 131, 202, 726, 1522, 1581
BspCNI CTCAG 2 cut(s) 304, 1017
BspDI ATCGAT 1 cut(s) 918
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 1110
BspLI GGNNCC 4 cut(s) 454, 566, 1097, 1640
BspMAI CTGCAG 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 3 cut(s) 1090, 1103, 1313
BspT104I TTCGAA 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 564
BspTNI GGTCTC 1 cut(s) 356
BsrBI CCGCTC 2 cut(s) 527, 723
BsrI ACTGG 2 cut(s) 285, 1359
BssHII GCGCGC 1 cut(s) 78
BssMI GATC 2 cut(s) 1095, 1305
BssNAI GTATAC 1 cut(s) 586
BssSI CACGAG 1 cut(s) 638
Bst1107I GTATAC 1 cut(s) 586
Bst2BI CACGAG 1 cut(s) 638
Bst4CI ACNGT 6 cut(s) 69, 98, 196, 299, 478, 1426
Bst6I CTCTTC 2 cut(s) 109, 406
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 5 cut(s) 80, 782, 824, 852, 1046
BstDEI CTNAG 3 cut(s) 291, 977, 1025
BstENI CCTNNNNNAGG 1 cut(s) 715
BstF5I GGATG 4 cut(s) 223, 1467, 1472, 1520
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 80, 82
BstKTI GATC 2 cut(s) 1098, 1308
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 1095, 1305
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 548, 824
BstSLI GKGCMC 1 cut(s) 45
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 450, 565, 568
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 1095
BstYI RGATCY 1 cut(s) 1095
BstZ17I GTATAC 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 918
BsuRI GGCC 5 cut(s) 131, 202, 726, 1522, 1581
BsuTUI ATCGAT 1 cut(s) 918
BtsCI GGATG 4 cut(s) 223, 1467, 1472, 1520
BtsI GCAGTG 3 cut(s) 291, 504, 693
BtsIMutI CAGTG 6 cut(s) 278, 291, 504, 681, 693, 1431
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 5 cut(s) 80, 782, 824, 852, 1046
CaiI CAGNNNCTG 1 cut(s) 328
CciI TCATGA 1 cut(s) 1110
CfoI GCGC 2 cut(s) 80, 82
Cfr13I GGNCC 3 cut(s) 453, 1008, 1638
ClaI ATCGAT 1 cut(s) 918
Csp6I GTAC 4 cut(s) 4, 197, 565, 1022
CspCI CAANNNNNGTGG 2 cut(s) 948, 983
CviAII CATG 9 cut(s) 25, 127, 494, 604, 819, 1012, 1111, 1583, 1598
CviQI GTAC 4 cut(s) 4, 197, 565, 1022
DdeI CTNAG 3 cut(s) 291, 977, 1025
DpnI GATC 2 cut(s) 1097, 1307
DpnII GATC 2 cut(s) 1095, 1305
DraI TTTAAA 1 cut(s) 1263
EaeI YGGCCR 2 cut(s) 200, 1579
Eam1104I CTCTTC 2 cut(s) 109, 406
EarI CTCTTC 2 cut(s) 109, 406
EciI GGCGGA 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 3 cut(s) 453, 1008, 1638
EcoNI CCTNNNNNAGG 1 cut(s) 715
EcoRI GAATTC 2 cut(s) 1015, 1402
EcoT22I ATGCAT 1 cut(s) 1243
FaeI CATG 9 cut(s) 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601
FaqI GGGAC 1 cut(s) 1624
FatI CATG 9 cut(s) 24, 126, 493, 603, 818, 1011, 1110, 1582, 1597
FauI CCCGC 1 cut(s) 1037
FauNDI CATATG 2 cut(s) 838, 1348
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 5 cut(s) 185, 464, 557, 579, 724
FokI GGATG 4 cut(s) 210, 1474, 1479, 1527
Fsp4HI GCNGC 5 cut(s) 185, 464, 557, 579, 724
FspBI CTAG 2 cut(s) 1130, 1355
GlaI GCGC 2 cut(s) 79, 81
GluI GCNGC 5 cut(s) 185, 464, 557, 579, 724
GsaI CCCAGC 2 cut(s) 1095, 1152
HaeIII GGCC 5 cut(s) 131, 202, 726, 1522, 1581
HhaI GCGC 2 cut(s) 80, 82
Hin1II CATG 9 cut(s) 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601
Hin6I GCGC 2 cut(s) 78, 80
HinP1I GCGC 2 cut(s) 78, 80
HincII GTYRAC 2 cut(s) 192, 679
HindII GTYRAC 2 cut(s) 192, 679
HindIII AAGCTT 1 cut(s) 1554
HinfI GANTC 8 cut(s) 289, 319, 501, 521, 686, 956, 1133, 1610
HphI GGTGA 4 cut(s) 134, 412, 1243, 1268
Hpy166II GTNNAC 7 cut(s) 179, 192, 586, 679, 793, 1209, 1364
Hpy188I TCNGA 9 cut(s) 294, 303, 324, 432, 865, 1086, 1300, 1408, 1629
Hpy188III TCNNGA 4 cut(s) 314, 384, 773, 1111
Hpy8I GTNNAC 7 cut(s) 179, 192, 586, 679, 793, 1209, 1364
HpyAV CCTTC 8 cut(s) 246, 255, 340, 659, 1373, 1477, 1582, 1613
HpyCH4III ACNGT 6 cut(s) 69, 98, 196, 299, 478, 1426
HpyCH4IV ACGT 2 cut(s) 588, 1390
HpyCH4V TGCA 7 cut(s) 263, 826, 836, 850, 947, 1189, 1241
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 3 cut(s) 291, 977, 1025
HpySE526I ACGT 2 cut(s) 588, 1390
Hsp92II CATG 9 cut(s) 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601
HspAI GCGC 2 cut(s) 78, 80
KpnI GGTACC 1 cut(s) 568
Kzo9I GATC 2 cut(s) 1095, 1305
LmnI GCTCC 4 cut(s) 303, 553, 720, 1504
Lsp1109I GCAGC 3 cut(s) 450, 565, 568
LweI GCATC 5 cut(s) 910, 1228, 1404, 1438, 1457
MaeI CTAG 2 cut(s) 1130, 1355
MaeII ACGT 2 cut(s) 588, 1390
MaeIII GTNAC 5 cut(s) 98, 286, 1216, 1321, 1531
MalI GATC 2 cut(s) 1097, 1307
MbiI CCGCTC 2 cut(s) 527, 723
MboI GATC 2 cut(s) 1095, 1305
MboII GAAGA 8 cut(s) 96, 231, 423, 451, 454, 457, 674, 775
MfeI CAATTG 1 cut(s) 1435
MflI RGATCY 1 cut(s) 1095
MhlI GDGCHC 2 cut(s) 45, 483
MlsI TGGCCA 1 cut(s) 1581
MluCI AATT 6 cut(s) 30, 309, 1015, 1374, 1402, 1435
MluNI TGGCCA 1 cut(s) 1581
MlyI GAGTC 3 cut(s) 283, 328, 530
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 1581
Mph1103I ATGCAT 1 cut(s) 1243
MscI TGGCCA 1 cut(s) 1581
MseI TTAA 5 cut(s) 15, 29, 591, 1262, 1551
MslI CAYNNNNRTG 1 cut(s) 1478
Msp20I TGGCCA 1 cut(s) 1581
MspA1I CMGCKG 1 cut(s) 1044
MunI CAATTG 1 cut(s) 1435
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 425
NdeI CATATG 2 cut(s) 838, 1348
NdeII GATC 2 cut(s) 1095, 1305
NlaIII CATG 9 cut(s) 28, 130, 497, 607, 822, 1015, 1114, 1586, 1601
NlaIV GGNNCC 4 cut(s) 454, 566, 1097, 1640
NmuCI GTSAC 4 cut(s) 98, 286, 1216, 1321
NsiI ATGCAT 1 cut(s) 1243
NspV TTCGAA 1 cut(s) 540
PagI TCATGA 1 cut(s) 1110
PauI GCGCGC 1 cut(s) 78
PfeI GAWTC 5 cut(s) 501, 686, 956, 1133, 1610
PkrI GCNGC 5 cut(s) 186, 465, 558, 580, 725
PleI GAGTC 3 cut(s) 283, 327, 529
PpsI GAGTC 3 cut(s) 283, 327, 529
PspFI CCCAGC 2 cut(s) 1091, 1148
PspN4I GGNNCC 4 cut(s) 454, 566, 1097, 1640
PspPI GGNCC 3 cut(s) 453, 1008, 1638
PstI CTGCAG 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 1095
PteI GCGCGC 1 cut(s) 78
RsaI GTAC 4 cut(s) 5, 198, 566, 1023
RsaNI GTAC 4 cut(s) 4, 197, 565, 1022
RseI CAYNNNNRTG 1 cut(s) 1478
SaqAI TTAA 5 cut(s) 15, 29, 591, 1262, 1551
SatI GCNGC 5 cut(s) 185, 464, 557, 579, 724
Sau3AI GATC 2 cut(s) 1095, 1305
Sau96I GGNCC 3 cut(s) 453, 1008, 1638
SbfI CCTGCAGG 1 cut(s) 828
ScaI AGTACT 1 cut(s) 1023
SchI GAGTC 3 cut(s) 283, 328, 530
SdaI CCTGCAGG 1 cut(s) 828
SduI GDGCHC 2 cut(s) 45, 483
SfaNI GCATC 5 cut(s) 910, 1228, 1404, 1438, 1457
SfcI CTRYAG 2 cut(s) 548, 824
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 3 cut(s) 453, 1008, 1638
SmiMI CAYNNNNRTG 1 cut(s) 1478
SmlI CTYRAG 4 cut(s) 314, 530, 752, 1493
SmoI CTYRAG 4 cut(s) 314, 530, 752, 1493
Sse8387I CCTGCAGG 1 cut(s) 828
Sse9I AATT 6 cut(s) 30, 309, 1015, 1374, 1402, 1435
SsiI CCGC 7 cut(s) 164, 182, 185, 525, 723, 1044, 1294
SspMI CTAG 2 cut(s) 1130, 1355
TaaI ACNGT 6 cut(s) 69, 98, 196, 299, 478, 1426
TaiI ACGT 2 cut(s) 591, 1393
TaqI TCGA 5 cut(s) 483, 540, 918, 1419, 1663
TasI AATT 6 cut(s) 30, 309, 1015, 1374, 1402, 1435
TatI WGTACW 2 cut(s) 3, 1021
TauI GCSGC 2 cut(s) 187, 726
TfiI GAWTC 5 cut(s) 501, 686, 956, 1133, 1610
Tru1I TTAA 5 cut(s) 15, 29, 591, 1262, 1551
Tru9I TTAA 5 cut(s) 15, 29, 591, 1262, 1551
TscAI CASTG 6 cut(s) 285, 291, 511, 688, 700, 1431
TseFI GTSAC 4 cut(s) 98, 286, 1216, 1321
TseI GCWGC 3 cut(s) 463, 556, 578
Tsp45I GTSAC 4 cut(s) 98, 286, 1216, 1321
TspDTI ATGAA 4 cut(s) 776, 1028, 1496, 1614
TspRI CASTG 6 cut(s) 285, 291, 511, 688, 700, 1431
VpaK11BI GGWCC 3 cut(s) 453, 1008, 1638
XagI CCTNNNNNAGG 1 cut(s) 715
XapI RAATTY 3 cut(s) 309, 1015, 1402
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 2 cut(s) 1130, 1355
ZrmI AGTACT 1 cut(s) 1023
Zsp2I ATGCAT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.