Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

5055423 .. 5055776

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTGACCAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGATGAAGAATACTCCTGATTGCCAGCCTGACGTCCATACTTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGCTGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

6.38

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	13 - 55	2e-09	PPR repeat family
PPR_3	PF13812	36 - 92	4.3e-10	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	216, 312
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	216, 312
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	125, 167
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	125, 167
CaiI	CAGNNNCTG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	15, 27, 127, 197, 263
CviKI_1	RGCY	5 cut(s)	15, 27, 127, 197, 263
CviQI	GTAC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	32
FatI	CATG	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	169, 179
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	7 cut(s)	129, 137, 141, 155, 179, 179, 269
Lsp1109I	GCAGC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	132
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	2 cut(s)	216, 312
MnlI	CCTC	2 cut(s)	104, 161
Mva1269I	GAATGC	1 cut(s)	325
NdeI	CATATG	1 cut(s)	181
NlaIII	CATG	1 cut(s)	32
PctI	GAATGC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	264
SbfI	CCTGCAGG	1 cut(s)	171
SdaI	CCTGCAGG	1 cut(s)	171
SetI	ASST	4 cut(s)	37, 135, 174, 265
SfcI	CTRYAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse8387I	CCTGCAGG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	216, 312
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	135
TasI	AATT	2 cut(s)	216, 312
TatI	WGTACW	1 cut(s)	190
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	45, 119
TspGWI	ACGGA	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	216, 312
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.