Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

57914201 .. 57917366

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG441800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGAATGTAAATGGAGTTGGACGTTCATTTGATGTGAATAAACAAGTAGTTGGCATGATGCAACTCTGGTCGTTGCTTATGTTATTTACTGATCAAGGAATCGTTCATTTAAGATATGTTATGTTTAATCTTCAGGTTTTTGAACTGCTGCAAGAGCAGCTCTGGTACCGGCCCAATCCTGGTGTTTACAATAAGCTAATTGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAATCTATTACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGACTGCCAGCCTGATGTCCATACTTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAAAGTGCAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCGAACACCATCACATACAATACCATGATCGATGCTTACGGGAAATCTAAAAAATTTGCAGAGATGGAGTCGACACTTGTGGCAATGCTTAGCCAACAGGATTGTGAGCCTGATGTCTGGACCATGAATTCCGTAGTGAGAGCCTTTGGCAGCAGTGGGCAAATAGAAACAATGGAGAAATGTTTTGAGAAGTTCCACAGTGCCGGAATCCAACCAAACATCATGACTTTCAACATTCTCCTCGATTCCTATGGAAAAGCTGGGAATTATAAAAAAATGAGTGCTGTGATGGAATACATGCAGAAATACCATTACTCATGGACAATCGTTACATACAATGTGGTGATAGATGCATTTGGGAGGGCTGGGGATATAACACAAATGGAGTATCTGTTTAGGCTAATGCGGTCAGAGCGGATCAAACCAAGCTGTGTCACACTTTGCTCACTCATAAGGGCTTATGGGAAAGCAGGTAAACCTGAAAAAATTAGTGGTGTTTTACGTTTTGTGGAGAATTCAGACGTGATATTGGATACTGTGTTTTTCAATTGTCTGGTTGATGCTTATGGGAGGCTGGGAGGCTTCACAGAAATGAAGGGGGTGCTTGAGATAATGAAGCAAAAAGGATGTTCTCCTGATAAGATCACATATAGAACCATGATTAAAGCTTATTCATTCAACAATATGACTGGCCATGTGAAGGAACTCCATGAACTTATGCAATCGGCAGGAAGTCAGATGACTTGGTCACAGAGACAAAAACCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

421

Amino Acids

48.07

Weight (kDa)

7.06

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	99 - 142	1.1e-10	PPR repeat family
PPR_3	PF13812	118 - 179	5.8e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	147 - 278	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	154 - 214	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	165 - 213	2.2e-08	PPR repeat family
PPR_3	PF13812	194 - 250	8.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	201 - 249	2.7e-08	PPR repeat family
PPR_3	PF13812	226 - 284	3.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	273 - 319	8.8e-09	PPR repeat family
TPR_24	PF23276	319 - 390	5.9e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	330 - 388	6.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	342 - 388	8.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
Acc36I	ACCTGC	2 cut(s)	421, 953
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	907
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	898, 907
AclWI	GGATC	1 cut(s)	917
AcoI	YGGCCR	1 cut(s)	1183
AcsI	RAATTY	4 cut(s)	477, 545, 619, 1006
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	182, 321, 1192
AgsI	TTSAA	5 cut(s)	146, 254, 724, 1039, 1171
AjiI	CACGTC	1 cut(s)	1015
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	8 cut(s)	163, 199, 239, 247, 257, 752, 921, 1160
AluI	AGCT	8 cut(s)	163, 199, 239, 247, 257, 752, 921, 1160
Alw26I	GTCTC	2 cut(s)	335, 1240
AlwI	GGATC	1 cut(s)	917
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	2 cut(s)	173, 1183
ApeKI	GCWGC	3 cut(s)	151, 160, 642
ApoI	RAATTY	4 cut(s)	477, 545, 619, 1006
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	174, 612
AsuHPI	GGTGA	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	1185
BanI	GGYRCC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	138, 172, 654
BccI	CCATC	3 cut(s)	509, 550, 775
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	1018
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	335, 1240
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	2 cut(s)	421, 953
BfuI	GTATCC	1 cut(s)	1018
BisI	GCNGC	3 cut(s)	152, 161, 643
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	3 cut(s)	153, 162, 644
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	612
BmgBI	CACGTC	1 cut(s)	1015
BmgT120I	GGNCC	2 cut(s)	174, 612
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	4 cut(s)	51, 514, 832, 1042
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	377, 1118
Bsa29I	ATCGAT	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 321, 1192
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	1186
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	522
BseGI	GGATG	1 cut(s)	1124
BseLI	CCNNNNNNNGG	3 cut(s)	182, 321, 1192
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	1186
BseRI	GAGGAG	2 cut(s)	257, 722
BseXI	GCAGC	3 cut(s)	138, 172, 654
BseYI	CCCAGC	3 cut(s)	752, 857, 1066
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	175, 1185
BshNI	GGYRCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	172, 696
BslI	CCNNNNNNNGG	3 cut(s)	182, 321, 1192
BsmAI	GTCTC	2 cut(s)	335, 1240
BsnI	GGCC	2 cut(s)	175, 1185
Bsp143I	GATC	4 cut(s)	94, 519, 909, 1134
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	2 cut(s)	898, 907
BspANI	GGCC	2 cut(s)	175, 1185
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	2 cut(s)	421, 953
BspPI	GGATC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	907
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	1186
BssAI	RCCGGY	1 cut(s)	171
BssMI	GATC	4 cut(s)	94, 519, 909, 1134
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	692, 1030
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	386, 428, 456
BstDEI	CTNAG	2 cut(s)	240, 581
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	1124
BstKTI	GATC	4 cut(s)	97, 522, 912, 1137
BstMAI	GTCTC	2 cut(s)	335, 1240
BstMBI	GATC	4 cut(s)	94, 519, 909, 1134
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 160, 460, 904
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	138, 172, 654
Bsu15I	ATCGAT	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	1018
BsuRI	GGCC	2 cut(s)	175, 1185
BsuTUI	ATCGAT	1 cut(s)	522
BtrI	CACGTC	1 cut(s)	1015
BtsCI	GGATG	1 cut(s)	1124
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	652, 697
BveI	ACCTGC	2 cut(s)	421, 953
Cac8I	GCNNGC	3 cut(s)	386, 428, 456
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	714
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	174, 612
ClaI	ATCGAT	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	169
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	240, 581
DpnI	GATC	4 cut(s)	96, 521, 911, 1136
DpnII	GATC	4 cut(s)	94, 519, 909, 1134
EaeI	YGGCCR	1 cut(s)	1183
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoRI	GAATTC	2 cut(s)	619, 1006
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	847
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	152, 161, 643
FokI	GGATG	1 cut(s)	1131
Fsp4HI	GCNGC	3 cut(s)	152, 161, 643
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	3 cut(s)	152, 161, 643
GsaI	CCCAGC	3 cut(s)	756, 861, 1070
HaeIII	GGCC	2 cut(s)	175, 1185
HapII	CCGG	2 cut(s)	172, 696
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	1158
HinfI	GANTC	5 cut(s)	102, 290, 560, 699, 737
HpaII	CCGG	2 cut(s)	172, 696
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	4 cut(s)	190, 224, 564, 968
Hpy188I	TCNGA	4 cut(s)	469, 904, 1012, 1230
Hpy188III	TCNNGA	4 cut(s)	377, 610, 715, 1127
Hpy8I	GTNNAC	4 cut(s)	190, 224, 564, 968
HpyAV	CCTTC	3 cut(s)	263, 1081, 1186
HpyCH4III	ACNGT	2 cut(s)	692, 1030
HpyCH4IV	ACGT	3 cut(s)	25, 994, 1014
HpyCH4V	TGCA	9 cut(s)	64, 154, 430, 440, 454, 551, 793, 845, 1213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 160, 460, 904
HpyF3I	CTNAG	2 cut(s)	240, 581
HpySE526I	ACGT	3 cut(s)	25, 994, 1014
KpnI	GGTACC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	94, 519, 909, 1134
LmnI	GCTCC	2 cut(s)	244, 324
Lsp1109I	GCAGC	3 cut(s)	138, 172, 654
LweI	GCATC	4 cut(s)	51, 514, 832, 1042
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	3 cut(s)	25, 994, 1014
MaeIII	GTNAC	3 cut(s)	820, 925, 1239
MalI	GATC	4 cut(s)	96, 521, 911, 1136
MbiI	CCGCTC	1 cut(s)	907
MboI	GATC	4 cut(s)	94, 519, 909, 1134
MboII	GAAGA	2 cut(s)	125, 379
MfeI	CAATTG	1 cut(s)	1039
MlsI	TGGCCA	1 cut(s)	1185
MluCI	AATT	8 cut(s)	201, 477, 545, 619, 757, 978, 1006, 1039
MluNI	TGGCCA	1 cut(s)	1185
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	7 cut(s)	235, 362, 422, 743, 846, 1056, 1064
Mox20I	TGGCCA	1 cut(s)	1185
Mph1103I	ATGCAT	1 cut(s)	847
MscI	TGGCCA	1 cut(s)	1185
MseI	TTAA	3 cut(s)	113, 129, 1155
MslI	CAYNNNNRTG	1 cut(s)	1082
Msp20I	TGGCCA	1 cut(s)	1185
MspI	CCGG	2 cut(s)	172, 696
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	1039
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	157, 160, 460, 904
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	4 cut(s)	94, 519, 909, 1134
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	925, 1239
NsiI	ATGCAT	1 cut(s)	847
NspI	RCATGY	1 cut(s)	793
PagI	TCATGA	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	102, 290, 699, 737
PflFI	GACNNNGTC	1 cut(s)	1237
PkrI	GCNGC	3 cut(s)	153, 162, 644
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	3 cut(s)	752, 857, 1066
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	174, 612
PstI	CTGCAG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	1237
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	1082
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	113, 129, 1155
SatI	GCNGC	3 cut(s)	152, 161, 643
Sau3AI	GATC	4 cut(s)	94, 519, 909, 1134
Sau96I	GGNCC	2 cut(s)	174, 612
SbfI	CCTGCAGG	1 cut(s)	432
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	183
SdaI	CCTGCAGG	1 cut(s)	432
SfaNI	GCATC	4 cut(s)	51, 514, 832, 1042
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	1082
SmlI	CTYRAG	2 cut(s)	356, 1097
SmoI	CTYRAG	2 cut(s)	356, 1097
Sse8387I	CCTGCAGG	1 cut(s)	432
Sse9I	AATT	8 cut(s)	201, 477, 545, 619, 757, 978, 1006, 1039
SsiI	CCGC	2 cut(s)	898, 907
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	692, 1030
TaiI	ACGT	3 cut(s)	28, 997, 1017
TaqI	TCGA	3 cut(s)	522, 563, 735
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	8 cut(s)	201, 477, 545, 619, 757, 978, 1006, 1039
TfiI	GAWTC	4 cut(s)	102, 290, 699, 737
Tru1I	TTAA	3 cut(s)	113, 129, 1155
Tru9I	TTAA	3 cut(s)	113, 129, 1155
TscAI	CASTG	2 cut(s)	652, 697
TseFI	GTSAC	2 cut(s)	925, 1239
TseI	GCWGC	3 cut(s)	151, 160, 642
Tsp45I	GTSAC	2 cut(s)	925, 1239
TspDTI	ATGAA	9 cut(s)	18, 98, 303, 380, 632, 1100, 1121, 1155, 1218
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	652, 697
Tth111I	GACNNNGTC	1 cut(s)	1237
VpaK11BI	GGWCC	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	319
XapI	RAATTY	4 cut(s)	477, 545, 619, 1006
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.