Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

28011242 .. 28013089

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACCGTCTCTGGCCGCCAAACCAGCAACTCTTCGGGCACAGACAAAGCCCCATGCTCAACCCACTAGTAACACCAATGCAGATAACAACGCTAGACTAGTAGTAACACAGAGAAAAGTAGTAGAGCTTCATAGGCTGAAAGATAAGGATGCTAAGGACAGAAAGGAGGAGACCAACAAGAAGATAGCTTCTCGGAAAGCAATTTTGGTCGTTTTGTGGAGAGAAGCTTCCGAATCCCACATTGAGAAGAAGAAAGGCTCCAGGAGACTGCTTTCGAGGATTGTGCTCGAAGCCCACCATGACAGAATCACTGCTCTGCAGTGGGAGTCTACTCTCAAGGTTTTCGCATATGACAAAGTGCAGGCTCCGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTATGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTACTGTGAATAATCTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

10.16

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	380
AciI	CCGC	2 cut(s)	66, 419
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	435, 531
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	538
AhlI	ACTAGT	2 cut(s)	116, 148
AjnI	CCWGG	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	4 cut(s)	18, 178, 239, 278
AluI	AGCT	4 cut(s)	18, 178, 239, 278
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	63, 215, 310
AoxI	GGCC	2 cut(s)	3, 63
ApoI	RAATTY	2 cut(s)	435, 531
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	3 cut(s)	63, 215, 310
BcuI	ACTAGT	2 cut(s)	116, 148
BfaI	CTAG	3 cut(s)	117, 144, 149
BfmI	CTRYAG	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	310, 417
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	2 cut(s)	190, 472
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	5, 65
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	3 cut(s)	63, 215, 310
BsmBI	CGTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	5, 65
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	91, 339
BspACI	CCGC	2 cut(s)	66, 419
BspANI	GGCC	2 cut(s)	5, 65
BspLI	GGNNCC	2 cut(s)	310, 417
BspMAI	CTGCAG	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	57, 556
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	63, 215, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 184, 418
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	5, 65
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	2 cut(s)	360, 377
BtsIMutI	CAGTG	2 cut(s)	360, 377
Cac8I	GCNNGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	2 cut(s)	104, 350
DdeI	CTNAG	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	107, 353
FaiI	YATR	8 cut(s)	105, 183, 351, 400, 402, 431, 466, 489
FatI	CATG	2 cut(s)	103, 349
FauNDI	CATATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	117, 144, 149
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	5, 65
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	107, 353
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	3 cut(s)	284, 357, 377
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	246, 283, 427
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	57, 556
HpyCH4V	TGCA	3 cut(s)	131, 370, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 184, 418
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	107, 353
LmnI	GCTCC	2 cut(s)	314, 421
LpnPI	CCDG	7 cut(s)	47, 51, 87, 298, 325, 398, 488
LweI	GCATC	2 cut(s)	190, 472
MaeI	CTAG	3 cut(s)	117, 144, 149
MaeIII	GTNAC	3 cut(s)	119, 154, 550
MboII	GAAGA	4 cut(s)	74, 244, 310, 313
MhlI	GDGCHC	2 cut(s)	91, 339
MluCI	AATT	3 cut(s)	252, 435, 531
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	4 cut(s)	16, 44, 211, 321
MseI	TTAA	2 cut(s)	14, 45
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	74, 184, 418
NdeI	CATATG	1 cut(s)	400
NlaIII	CATG	2 cut(s)	107, 353
NlaIV	GGNNCC	2 cut(s)	310, 417
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	284, 357
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	310, 417
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	14, 45
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	91, 339
SetI	ASST	5 cut(s)	20, 180, 241, 280, 393
SfaNI	GCATC	2 cut(s)	190, 472
SfcI	CTRYAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	13, 386
SmoI	CTYRAG	2 cut(s)	13, 386
SpeI	ACTAGT	2 cut(s)	116, 148
Sse9I	AATT	3 cut(s)	252, 435, 531
SsiI	CCGC	2 cut(s)	66, 419
SspMI	CTAG	3 cut(s)	117, 144, 149
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	57, 556
TaqI	TCGA	2 cut(s)	326, 339
TasI	AATT	3 cut(s)	252, 435, 531
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	284, 357
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TscAI	CASTG	2 cut(s)	367, 377
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	367, 377
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	435, 531
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	3 cut(s)	117, 144, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.