Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011314.1

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

42852 .. 44116

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011314.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgacgatgtccgagacggcggaggcgaacgtgatgtgctatgtctacgaggcggcgctatgctgggtacgaaagccctatatgctcgcacagtcccccaacacaacagtcaaattcatggcctcactattaagctcaacccaaccacttccaccggcgtttaacagaggaccgtctccggccaccaaaccagcaactcttcgggcacagacaaagtcccatgctcaacccactagtaataccagtgcagataataacgctagactggcagtcgttttgcggagagaagctaccgaatcccacatcgagaagaagaaaggctccaagagactgcttccgaggattgtgctcgaagccctccatgagagaatcattgctctgcggtgggagtctgctctcaaggtcactcctttttaccttggttttattctgacttggttttcgagaattgggaatgtatataatggtgttaatcctggtgtttacaataagctaatagtcatgctaggaaaatgtaaacaaccagaaaaggctgaggagctttttcaagctatgattgatgaaggctgtggtgtcagccatgaaccttatactgctcttatatctgcctatggtaggagcagtctctttgacaaagcattttccctccttgagcagatgaagaatactcctgattgccagcctgacgtccatacttattctatcctcataaaatcttgcctgcaggtttttgcatatgacagtgcaggctctgctttcagatatggaaattcagcacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

260

Amino Acids

28.9

Weight (kDa)

9.16

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	4 cut(s)	20, 53, 280, 382
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	113, 769
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	548
AhdI	GACNNNNNGTC	1 cut(s)	269
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	5 cut(s)	135, 290, 493, 541, 551
AluI	AGCT	5 cut(s)	135, 290, 493, 541, 551
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	4 cut(s)	8, 180, 322, 629
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	120, 180
ApoI	RAATTY	2 cut(s)	113, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	534
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	4 cut(s)	8, 180, 322, 629
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	3 cut(s)	234, 261, 506
BfmI	CTRYAG	1 cut(s)	722
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	383, 671
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	338, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	243, 270
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	338, 418
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	243, 270
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	2 cut(s)	267, 765
BshFI	GGCC	2 cut(s)	122, 182
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	155, 179
BslFI	GGGAC	2 cut(s)	79, 202
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	4 cut(s)	8, 180, 322, 629
BsmBI	CGTCTC	2 cut(s)	8, 180
BsmFI	GGGAC	2 cut(s)	79, 202
BsnI	GGCC	2 cut(s)	122, 182
Bsp1286I	GDGCHC	2 cut(s)	208, 351
BspACI	CCGC	4 cut(s)	20, 53, 280, 382
BspANI	GGCC	2 cut(s)	122, 182
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	726
BspMI	ACCTGC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	243, 270
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	338, 418
BssNI	GRCGYC	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	4 cut(s)	93, 109, 174, 743
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	687
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	87, 680, 722, 748
BstDEI	CTNAG	1 cut(s)	534
BstENI	CCTNNNNNAGG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstMAI	GTCTC	4 cut(s)	8, 180, 322, 629
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 266, 752
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	722
BstSLI	GKGCMC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	122, 182
BtsIMutI	CAGTG	2 cut(s)	250, 748
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	4 cut(s)	87, 680, 722, 748
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	5 cut(s)	118, 221, 362, 502, 581
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	534
DriI	GACNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	8, 180
FaeI	CATG	5 cut(s)	121, 224, 365, 505, 584
FaqI	GGGAC	2 cut(s)	79, 202
FatI	CATG	5 cut(s)	117, 220, 361, 501, 580
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	3 cut(s)	234, 261, 506
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	122, 182
HapII	CCGG	2 cut(s)	155, 179
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	5 cut(s)	121, 224, 365, 505, 584
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	3 cut(s)	296, 369, 389
HpaII	CCGG	2 cut(s)	155, 179
Hpy166II	GTNNAC	3 cut(s)	46, 484, 518
Hpy188I	TCNGA	4 cut(s)	13, 339, 432, 761
Hpy188III	TCNNGA	3 cut(s)	307, 444, 671
Hpy8I	GTNNAC	3 cut(s)	46, 484, 518
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	4 cut(s)	93, 109, 174, 743
HpyCH4IV	ACGT	2 cut(s)	30, 687
HpyCH4V	TGCA	4 cut(s)	248, 724, 734, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 266, 752
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	2 cut(s)	30, 687
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	5 cut(s)	121, 224, 365, 505, 584
HspAI	GCGC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	326, 538, 618
MaeI	CTAG	3 cut(s)	234, 261, 506
MaeII	ACGT	2 cut(s)	30, 687
MaeIII	GTNAC	1 cut(s)	403
MboII	GAAGA	4 cut(s)	191, 322, 325, 673
MhlI	GDGCHC	2 cut(s)	208, 351
MluCI	AATT	3 cut(s)	113, 447, 769
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	16, 43, 133, 161, 333, 368, 529, 656, 716
MseI	TTAA	3 cut(s)	131, 162, 471
MspI	CCGG	2 cut(s)	155, 179
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	82, 266, 752
NdeI	CATATG	1 cut(s)	736
NlaIII	CATG	5 cut(s)	121, 224, 365, 505, 584
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	296, 369
PflFI	GACNNNGTC	2 cut(s)	7, 214
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	752
PsyI	GACNNNGTC	2 cut(s)	7, 214
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	131, 162, 471
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	170
SbfI	CCTGCAGG	1 cut(s)	726
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	477
SdaI	CCTGCAGG	1 cut(s)	726
SduI	GDGCHC	2 cut(s)	208, 351
SfcI	CTRYAG	1 cut(s)	722
SgrAI	CRCCGGYG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	398, 650
SmoI	CTYRAG	2 cut(s)	398, 650
SpeI	ACTAGT	1 cut(s)	233
Sse8387I	CCTGCAGG	1 cut(s)	726
Sse9I	AATT	3 cut(s)	113, 447, 769
SsiI	CCGC	4 cut(s)	20, 53, 280, 382
SspMI	CTAG	3 cut(s)	234, 261, 506
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	4 cut(s)	93, 109, 174, 743
TaiI	ACGT	2 cut(s)	33, 690
TaqI	TCGA	3 cut(s)	306, 351, 443
TasI	AATT	3 cut(s)	113, 447, 769
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	296, 369
Tru1I	TTAA	3 cut(s)	131, 162, 471
Tru9I	TTAA	3 cut(s)	131, 162, 471
TscAI	CASTG	2 cut(s)	250, 748
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	106, 576, 597, 674
TspRI	CASTG	2 cut(s)	250, 748
Tth111I	GACNNNGTC	2 cut(s)	7, 214
VpaK11BI	GGWCC	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	613
XapI	RAATTY	2 cut(s)	113, 769
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	3 cut(s)	234, 261, 506
ZraI	GACGTC	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.