Rh2DG484700

Pentatricopeptide repeat-containing protein At5g48730

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
70034183 .. 70043931
9749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG484700.1

Sequence Viewer

Length: 351 bp
ATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGTAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCAGCCTGACGTCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCACATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAACAACCACCAGCTGA

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

5.44

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 30 - 73 2.5e-12 PPR repeat family
PPR PF01535 30 - 54 1.6e-06 PPR repeat
PPR_3 PF13812 49 - 110 3.3e-10 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 4 cut(s) 32, 40, 50, 348
AluI AGCT 4 cut(s) 32, 40, 50, 348
Alw26I GTCTC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 253
ApoI RAATTY 1 cut(s) 270
BbvCI CCTCAGC 1 cut(s) 33
BccI CCATC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 214
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 214
BssNI GRCGYC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 179, 221
BstDEI CTNAG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 179, 221
CaiI CAGNNNCTG 1 cut(s) 253
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 80, 236
CviJI RGCY 8 cut(s) 32, 40, 50, 66, 78, 181, 251, 348
CviKI_1 RGCY 8 cut(s) 32, 40, 50, 66, 78, 181, 251, 348
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 2 cut(s) 83, 239
FatI CATG 2 cut(s) 79, 235
FspBI CTAG 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 2 cut(s) 83, 239
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 223, 233
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 83, 239
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 8 cut(s) 36, 183, 191, 195, 209, 233, 233, 323
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 186
MboII GAAGA 1 cut(s) 172
MluCI AATT 1 cut(s) 270
MnlI CCTC 3 cut(s) 28, 155, 215
MspA1I CMGCKG 1 cut(s) 348
NlaIII CATG 2 cut(s) 83, 239
PstI CTGCAG 1 cut(s) 225
PstNI CAGNNNCTG 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 348
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SbfI CCTGCAGG 1 cut(s) 225
SdaI CCTGCAGG 1 cut(s) 225
SetI ASST 8 cut(s) 34, 42, 52, 88, 189, 197, 228, 350
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse8387I CCTGCAGG 1 cut(s) 225
Sse9I AATT 1 cut(s) 270
SspMI CTAG 1 cut(s) 5
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 270
TatI WGTACW 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 96, 173
TspGWI ACGGA 1 cut(s) 339
XagI CCTNNNNNAGG 1 cut(s) 112
XapI RAATTY 1 cut(s) 270
XspI CTAG 1 cut(s) 5
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.