Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

22715259 .. 22717679

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG195600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGATTGACGAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGCAAACCAGTCTTAAATAGAACCATGAGTACATGCATCTTCATCAATCCAAACATTCCCGACAGAGCGGAGTACAAACAAAGGAATCAGCACCTGTCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

54

Amino Acids

6.08

Weight (kDa)

6.7

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	158
AciI	CCGC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	91, 134
AlwNI	CAGNNNCTG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	90, 133
CviAII	CATG	3 cut(s)	29, 85, 93
CviJI	RGCY	2 cut(s)	15, 27
CviKI_1	RGCY	2 cut(s)	15, 27
CviQI	GTAC	2 cut(s)	90, 133
EcoT22I	ATGCAT	1 cut(s)	98
FaeI	CATG	3 cut(s)	32, 88, 96
FaiI	YATR	6 cut(s)	30, 39, 50, 60, 86, 94
FatI	CATG	3 cut(s)	28, 84, 92
FblI	GTMKAC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	32, 88, 96
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	32, 88, 96
LpnPI	CCDG	1 cut(s)	81
LweI	GCATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	1 cut(s)	74
NlaIII	CATG	3 cut(s)	32, 88, 96
NsiI	ATGCAT	1 cut(s)	98
NspI	RCATGY	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	73, 105
PstNI	CAGNNNCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	91, 134
RsaNI	GTAC	2 cut(s)	90, 133
SaqAI	TTAA	1 cut(s)	74
SetI	ASST	3 cut(s)	37, 156, 164
SfaNI	GCATC	1 cut(s)	105
SgeI	CNNG	5 cut(s)	41, 80, 97, 105, 131
SsiI	CCGC	1 cut(s)	128
TatI	WGTACW	2 cut(s)	89, 132
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	45, 91
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.