Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012399.1

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

20609 .. 21700

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012399.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggcctcactcttaagctcaacccaaccacttccaccggcgtttaaccgaggaccgtctccggccaccaaaccagcaactcttcgggcacagacgaagccccatgctcaacccactagtaataccagtgcagataacaacgctagactggcagtaacacagagaaaagcagtagagcttcagaggctgaaagataaggaggccaaggacagaaaggaggagaccaacaagaagatagcttatcggaaagcaatttcggtctttttgaggagagaagctaccgaatcccacatcgagaagaagaaaggctccaggagactgcttccgaggattgtgctcgaagccctctatgagagaatcactgctctgctgtgggagtctgctctcaaggtttttgaactactacaagatcagctctggtaccggcccaatcctggtgtttacaataagctaatagtcatgctaggaaaatgtaaacaaccagaaaaagctgaggagctttttcaagctatgattgacgaaggctgtggtgtcagccatgaaccttatactgctcttatatctgcctatggtaggagcagtctctttgacaatagtattttccctccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

203

Amino Acids

22.92

Weight (kDa)

9.72

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	434, 573
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	398, 506
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	311, 433
AluBI	AGCT	9 cut(s)	18, 178, 239, 278, 415, 451, 491, 499, 509
AluI	AGCT	9 cut(s)	18, 178, 239, 278, 415, 451, 491, 499, 509
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	4 cut(s)	63, 215, 310, 587
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	4 cut(s)	3, 63, 201, 425
Asp718I	GGTACC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	53, 426
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	313, 435
BcoDI	GTCTC	4 cut(s)	63, 215, 310, 587
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 144, 464
BfrI	CTTAAG	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	313, 435
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	53, 426
BmiI	GGNNCC	2 cut(s)	310, 422
BmrFI	CCNGG	2 cut(s)	313, 435
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	49, 204, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 573
Bse118I	RCCGGY	2 cut(s)	37, 423
Bse1I	ACTGG	2 cut(s)	126, 153
BseBI	CCWGG	2 cut(s)	313, 435
BseDI	CCNNGG	3 cut(s)	49, 204, 326
BseLI	CCNNNNNNNGG	2 cut(s)	434, 573
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	126, 153
BseRI	GAGGAG	3 cut(s)	233, 283, 509
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	5, 65, 203, 427
BshNI	GGYRCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	38, 62, 424
BslI	CCNNNNNNNGG	2 cut(s)	434, 573
BsmAI	GTCTC	4 cut(s)	63, 215, 310, 587
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	5, 65, 203, 427
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	91, 339
Bsp143I	GATC	1 cut(s)	409
BspANI	GGCC	4 cut(s)	5, 65, 203, 427
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	310, 422
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	37, 423
BsrI	ACTGG	2 cut(s)	126, 153
BssAI	RCCGGY	2 cut(s)	37, 423
BssECI	CCNNGG	3 cut(s)	49, 204, 326
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	313, 435
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	492
BstENI	CCTNNNNNAGG	1 cut(s)	571
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	4 cut(s)	63, 215, 310, 587
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	2 cut(s)	313, 435
BstSCI	CCNGG	2 cut(s)	311, 433
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	4 cut(s)	5, 65, 203, 427
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	37, 423
Cfr13I	GGNCC	2 cut(s)	53, 426
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	3 cut(s)	104, 460, 539
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	311, 433
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	3 cut(s)	107, 463, 542
FaiI	YATR	8 cut(s)	105, 351, 461, 512, 540, 549, 560, 570
FatI	CATG	3 cut(s)	103, 459, 538
FspBI	CTAG	3 cut(s)	117, 144, 464
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	4 cut(s)	5, 65, 203, 427
HapII	CCGG	3 cut(s)	38, 62, 424
Hin1II	CATG	3 cut(s)	107, 463, 542
HinfI	GANTC	3 cut(s)	284, 357, 377
HpaII	CCGG	3 cut(s)	38, 62, 424
Hpy166II	GTNNAC	2 cut(s)	442, 476
Hpy188I	TCNGA	3 cut(s)	183, 246, 327
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	442, 476
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
HpyF3I	CTNAG	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	107, 463, 542
KpnI	GGTACC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	3 cut(s)	314, 496, 576
MaeI	CTAG	3 cut(s)	117, 144, 464
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	4 cut(s)	74, 244, 310, 313
MhlI	GDGCHC	2 cut(s)	91, 339
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	9 cut(s)	16, 44, 177, 193, 211, 261, 321, 356, 487
MseI	TTAA	2 cut(s)	14, 45
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	3 cut(s)	38, 62, 424
MspR9I	CCNGG	2 cut(s)	313, 435
MvaI	CCWGG	2 cut(s)	313, 435
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	107, 463, 542
NlaIV	GGNNCC	2 cut(s)	310, 422
PfeI	GAWTC	2 cut(s)	284, 357
PfoI	TCCNGGA	1 cut(s)	311
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	311, 433
PspGI	CCWGG	2 cut(s)	311, 433
PspN4I	GGNNCC	2 cut(s)	310, 422
PspPI	GGNCC	2 cut(s)	53, 426
PstNI	CAGNNNCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	14, 45
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	2 cut(s)	53, 426
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	313, 435
SduI	GDGCHC	2 cut(s)	91, 339
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	13, 386
SmoI	CTYRAG	2 cut(s)	13, 386
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	1 cut(s)	252
SspMI	CTAG	3 cut(s)	117, 144, 464
StyD4I	CCNGG	2 cut(s)	311, 433
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	294, 339
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	284, 357
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TscAI	CASTG	2 cut(s)	133, 367
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	571
XspI	CTAG	3 cut(s)	117, 144, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.