Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

15273270 .. 15276298

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCCTCACCCTTAAGCTCAACCCAACCACTTCCACCGACGTTCAACCGAGGACCGGCTCCGGCCACCAAACCCGCAACTTTTCGGCCACAGACCACGCCCCATGCTCAACCCACTAGTAATACCAGTGCAGATAACAACGCTAGACTAGCAGTAACACAGAGAAAAGCAGTGGAGCTTGAGAGGCTAAAAGATAAGGAGGCCAAGGACAGAAAGGAGGAGACCAACAACAAGATCGCTTCTCGGAAAGCAATTTCGGTCGTTTTGCGGAGAGAAGCTACCAAATCCCACATCGAGAAGAAGAAAGGCTCCAAGAGACTGCTTCCTAGGACTGTGCTCGAAGCCCTCCATGAGAGAATCACTGCTCTGCGATGGGAGTCTGCTCTCAAGGTTTTTGAACTACTACAAGAGCAGCTCTGGTACCGGCCCAATCCTGGTGTTTACAATAAGCTAATTGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAATCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCGTGACTGCCAGCCTGACGTCCATACTTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAAAGTGCAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATCGATGCTTACGGGAAATCTAAAAAATTTGCAGAGATGGAGTCGACACTTGTGGCAATGCTTAGCCAACAGGATTGTGAGCCTGATGTCTGGACCATGAATTCCGTAGTGAGAGCCTTTGGCAGCAGTGGGCAAATAGAAACAATGGAGAAATGTTTTGAGAAGTTCCACAGTGCCGGAATCCAACCAAACATCATGACTTTCAACATTCTTCTTGATTCCTATGGAAAAGCTGGGAATTATAAAAAAATGAGTGCTGTGATGGAATACATGCAGAAATACCATTACTCATGGACAATCGTTACATACAATGTGGTGATAGATGCATTTGGGAGGGCAGGGGATTTAACACAAATGGAGTATCTGTTTAGGCTAATGCGGTCAGAGCGGATCAAACCAAGCTGTGTCACACTTTGCTCACTCATAAGGGCTTATGGGAAAGCAGGTAAACCTGAAAAAATTAGTGGTGTTTTACGTTTTGTGGAGAATTCAGACGTGATATTGGATGCTGTGTTTTTCAATTGTCTGGTTGATGCTTATGGGAGACTGGGATGCTTCACAGAAATGAAGGGGGTGCTTGAGATAATGAAGCAAAAAGGTTGTTCTCCTGATAAGATCACATATAGAACCATGATTAAAGCTTATTCATTCAACAATATGACTGGCCATGTGAAGGAACTCCATGAACTTCTGCAATTGGCAGGAAGTCAGATGACTTGGTCACAGAGACAAAAACCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

506

Amino Acids

57.33

Weight (kDa)

9.15

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	143 - 190	7.9e-07	PPR repeat family
PPR_2	PF13041	182 - 226	7.9e-13	PPR repeat family
PPR	PF01535	182 - 207	2.9e-06	PPR repeat
PPR_3	PF13812	202 - 263	8.4e-10	Pentatricopeptide repeat domain
PPR_long	PF17177	230 - 361	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	238 - 298	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	249 - 297	4.2e-08	PPR repeat family
PPR_3	PF13812	278 - 334	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	285 - 333	3.4e-08	PPR repeat family
PPR_3	PF13812	310 - 368	4.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	357 - 403	1.3e-08	PPR repeat family
TPR_24	PF23276	401 - 473	2.6e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	426 - 472	1.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AatII	GACGTC	1 cut(s)	648
Acc36I	ACCTGC	2 cut(s)	673, 1205
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	420
AccBSI	CCGCTC	1 cut(s)	1159
AccI	GTMKAC	1 cut(s)	815
AciI	CCGC	4 cut(s)	75, 268, 1150, 1159
AclWI	GGATC	1 cut(s)	1169
AcoI	YGGCCR	3 cut(s)	63, 86, 1435
AcsI	RAATTY	4 cut(s)	729, 797, 871, 1258
AcyI	GRCGYC	1 cut(s)	645
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	4 cut(s)	55, 434, 573, 1444
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	46, 398, 506, 976, 1291, 1423
AhlI	ACTAGT	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	1267
AjnI	CCWGG	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	5 cut(s)	215, 310, 587, 1309, 1492
AlwI	GGATC	1 cut(s)	1169
AlwNI	CAGNNNCTG	1 cut(s)	712
AoxI	GGCC	6 cut(s)	3, 63, 86, 201, 425, 1435
ApeKI	GCWGC	2 cut(s)	412, 894
ApoI	RAATTY	4 cut(s)	729, 797, 871, 1258
Asp718I	GGTACC	1 cut(s)	420
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	53, 426, 864
AsuHPI	GGTGA	1 cut(s)	1099
AvaII	GGWCC	2 cut(s)	53, 864
AvrII	CCTAGG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	1437
BanI	GGYRCC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	424, 906
BccI	CCATC	4 cut(s)	366, 761, 802, 1027
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	5 cut(s)	215, 310, 587, 1309, 1492
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	5 cut(s)	117, 144, 149, 327, 464
BfmI	CTRYAG	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	2 cut(s)	673, 1205
BisI	GCNGC	2 cut(s)	413, 895
BlnI	CCTAGG	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	833
BlsI	GCNGC	2 cut(s)	414, 896
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	2 cut(s)	53, 864
BmgBI	CACGTC	1 cut(s)	1267
BmgT120I	GGNCC	3 cut(s)	53, 426, 864
BmiI	GGNNCC	3 cut(s)	60, 310, 422
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	1328
BmsI	GCATC	5 cut(s)	766, 1084, 1267, 1294, 1313
BmuI	ACTGGG	1 cut(s)	1328
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	4 cut(s)	200, 371, 629, 1370
Bsa29I	ATCGAT	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	49, 204, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	1121, 1151
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 434, 573, 1444
Bse118I	RCCGGY	2 cut(s)	55, 423
Bse1I	ACTGG	3 cut(s)	126, 1323, 1438
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	3 cut(s)	49, 204, 326
BseGI	GGATG	2 cut(s)	1282, 1328
BseLI	CCNNNNNNNGG	4 cut(s)	55, 434, 573, 1444
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	126, 1323, 1438
BseRI	GAGGAG	2 cut(s)	233, 509
BseXI	GCAGC	2 cut(s)	424, 906
BseYI	CCCAGC	1 cut(s)	1004
BsgI	GTGCAG	2 cut(s)	150, 725
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	6 cut(s)	5, 65, 88, 203, 427, 1437
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	774
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	4 cut(s)	56, 62, 424, 948
BslI	CCNNNNNNNGG	4 cut(s)	55, 434, 573, 1444
BsmAI	GTCTC	5 cut(s)	215, 310, 587, 1309, 1492
BsnI	GGCC	6 cut(s)	5, 65, 88, 203, 427, 1437
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	234, 771, 1161, 1386
Bsp1720I	GCTNAGC	1 cut(s)	833
BspACI	CCGC	4 cut(s)	75, 268, 1150, 1159
BspANI	GGCC	6 cut(s)	5, 65, 88, 203, 427, 1437
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	774
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	3 cut(s)	60, 310, 422
BspMAI	CTGCAG	1 cut(s)	684
BspMI	ACCTGC	2 cut(s)	673, 1205
BspPI	GGATC	1 cut(s)	1169
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	1159
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	2 cut(s)	55, 423
BsrI	ACTGG	3 cut(s)	126, 1323, 1438
BssAI	RCCGGY	2 cut(s)	55, 423
BssECI	CCNNGG	3 cut(s)	49, 204, 326
BssMI	GATC	4 cut(s)	234, 771, 1161, 1386
BssNI	GRCGYC	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	204, 326
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	334, 944
BstACI	GRCGYC	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	638, 680, 708
BstDEI	CTNAG	2 cut(s)	492, 833
BstENI	CCTNNNNNAGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	1282, 1328
BstKTI	GATC	4 cut(s)	237, 774, 1164, 1389
BstMAI	GTCTC	5 cut(s)	215, 310, 587, 1309, 1492
BstMBI	GATC	4 cut(s)	234, 771, 1161, 1386
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 184, 712, 1156
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	1045
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	2 cut(s)	424, 906
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	6 cut(s)	5, 65, 88, 203, 427, 1437
BsuTUI	ATCGAT	1 cut(s)	774
BtgZI	GCGATG	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	1267
BtsCI	GGATG	2 cut(s)	1282, 1328
BtsI	GCAGTG	3 cut(s)	177, 360, 904
BtsIMutI	CAGTG	5 cut(s)	133, 177, 360, 904, 949
BveI	ACCTGC	2 cut(s)	673, 1205
Cac8I	GCNNGC	3 cut(s)	638, 680, 708
CaiI	CAGNNNCTG	1 cut(s)	712
CciI	TCATGA	1 cut(s)	966
Cfr10I	RCCGGY	2 cut(s)	55, 423
Cfr13I	GGNCC	3 cut(s)	53, 426, 864
ClaI	ATCGAT	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	421
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	492, 833
DpnI	GATC	4 cut(s)	236, 773, 1163, 1388
DpnII	GATC	4 cut(s)	234, 771, 1161, 1386
EaeI	YGGCCR	3 cut(s)	63, 86, 1435
Eco130I	CCWWGG	2 cut(s)	204, 326
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	53, 864
EcoNI	CCTNNNNNAGG	1 cut(s)	571
EcoRI	GAATTC	2 cut(s)	871, 1258
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	204, 326
EcoT22I	ATGCAT	1 cut(s)	1099
ErhI	CCWWGG	2 cut(s)	204, 326
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	2 cut(s)	413, 895
FokI	GGATG	2 cut(s)	1289, 1335
Fsp4HI	GCNGC	2 cut(s)	413, 895
FspBI	CTAG	5 cut(s)	117, 144, 149, 327, 464
GluI	GCNGC	2 cut(s)	413, 895
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	6 cut(s)	5, 65, 88, 203, 427, 1437
HapII	CCGG	4 cut(s)	56, 62, 424, 948
Hin1I	GRCGYC	1 cut(s)	645
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	1410
HinfI	GANTC	6 cut(s)	357, 377, 542, 812, 951, 989
HpaII	CCGG	4 cut(s)	56, 62, 424, 948
HphI	GGTGA	1 cut(s)	1099
Hpy166II	GTNNAC	4 cut(s)	442, 476, 816, 1220
Hpy188I	TCNGA	5 cut(s)	246, 721, 1156, 1264, 1482
Hpy188III	TCNNGA	6 cut(s)	295, 629, 862, 967, 986, 1379
Hpy8I	GTNNAC	4 cut(s)	442, 476, 816, 1220
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	515, 1333, 1438
HpyCH4III	ACNGT	2 cut(s)	334, 944
HpyCH4IV	ACGT	4 cut(s)	41, 645, 1246, 1266
HpyCH4V	TGCA	8 cut(s)	131, 682, 692, 706, 803, 1045, 1097, 1465
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 184, 712, 1156
HpyF3I	CTNAG	2 cut(s)	492, 833
HpySE526I	ACGT	4 cut(s)	41, 645, 1246, 1266
Hsp92I	GRCGYC	1 cut(s)	645
KpnI	GGTACC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	234, 771, 1161, 1386
LmnI	GCTCC	5 cut(s)	64, 175, 314, 496, 576
Lsp1109I	GCAGC	2 cut(s)	424, 906
LweI	GCATC	5 cut(s)	766, 1084, 1267, 1294, 1313
MaeI	CTAG	5 cut(s)	117, 144, 149, 327, 464
MaeII	ACGT	4 cut(s)	41, 645, 1246, 1266
MaeIII	GTNAC	5 cut(s)	154, 629, 1072, 1177, 1491
MalI	GATC	4 cut(s)	236, 773, 1163, 1388
MbiI	CCGCTC	1 cut(s)	1159
MboI	GATC	4 cut(s)	234, 771, 1161, 1386
MboII	GAAGA	4 cut(s)	310, 313, 631, 974
MfeI	CAATTG	2 cut(s)	1291, 1466
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	1437
MluNI	TGGCCA	1 cut(s)	1437
MlyI	GAGTC	2 cut(s)	386, 821
MmeI	TCCRAC	1 cut(s)	979
Mox20I	TGGCCA	1 cut(s)	1437
Mph1103I	ATGCAT	1 cut(s)	1099
MscI	TGGCCA	1 cut(s)	1437
MseI	TTAA	3 cut(s)	14, 1118, 1407
MslI	CAYNNNNRTG	1 cut(s)	1334
Msp20I	TGGCCA	1 cut(s)	1437
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	4 cut(s)	56, 62, 424, 948
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	2 cut(s)	1291, 1466
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	149, 184, 712, 1156
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	4 cut(s)	234, 771, 1161, 1386
NlaIV	GGNNCC	3 cut(s)	60, 310, 422
NmuCI	GTSAC	3 cut(s)	629, 1177, 1491
NsiI	ATGCAT	1 cut(s)	1099
NspI	RCATGY	1 cut(s)	1045
PagI	TCATGA	1 cut(s)	966
PfeI	GAWTC	4 cut(s)	357, 542, 951, 989
PflFI	GACNNNGTC	1 cut(s)	1489
PkrI	GCNGC	2 cut(s)	414, 896
PleI	GAGTC	2 cut(s)	385, 820
PpsI	GAGTC	2 cut(s)	385, 820
PsiI	TTATAA	1 cut(s)	1014
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	60, 310, 422
PspPI	GGNCC	3 cut(s)	53, 426, 864
PstI	CTGCAG	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	1489
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	1334
SalI	GTCGAC	1 cut(s)	814
SaqAI	TTAA	3 cut(s)	14, 1118, 1407
SatI	GCNGC	2 cut(s)	413, 895
Sau3AI	GATC	4 cut(s)	234, 771, 1161, 1386
Sau96I	GGNCC	3 cut(s)	53, 426, 864
SbfI	CCTGCAGG	1 cut(s)	684
SchI	GAGTC	2 cut(s)	386, 821
ScrFI	CCNGG	1 cut(s)	435
SdaI	CCTGCAGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	5 cut(s)	766, 1084, 1267, 1294, 1313
SfcI	CTRYAG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	53, 864
SmiMI	CAYNNNNRTG	1 cut(s)	1334
SmlI	CTYRAG	5 cut(s)	13, 179, 386, 608, 1349
SmoI	CTYRAG	5 cut(s)	13, 179, 386, 608, 1349
SpeI	ACTAGT	1 cut(s)	116
Sse8387I	CCTGCAGG	1 cut(s)	684
SsiI	CCGC	4 cut(s)	75, 268, 1150, 1159
SspMI	CTAG	5 cut(s)	117, 144, 149, 327, 464
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	204, 326
TaaI	ACNGT	2 cut(s)	334, 944
TaiI	ACGT	4 cut(s)	44, 648, 1249, 1269
TaqI	TCGA	4 cut(s)	294, 339, 774, 815
TaqII	GACCGA	1 cut(s)	247
TfiI	GAWTC	4 cut(s)	357, 542, 951, 989
Tru1I	TTAA	3 cut(s)	14, 1118, 1407
Tru9I	TTAA	3 cut(s)	14, 1118, 1407
TscAI	CASTG	5 cut(s)	133, 177, 367, 904, 949
TseFI	GTSAC	3 cut(s)	629, 1177, 1491
TseI	GCWGC	2 cut(s)	412, 894
Tsp45I	GTSAC	3 cut(s)	629, 1177, 1491
TspDTI	ATGAA	7 cut(s)	555, 632, 884, 1352, 1373, 1407, 1470
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	5 cut(s)	133, 177, 367, 904, 949
Tth111I	GACNNNGTC	1 cut(s)	1489
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	53, 864
XagI	CCTNNNNNAGG	1 cut(s)	571
XapI	RAATTY	4 cut(s)	729, 797, 871, 1258
XceI	RCATGY	1 cut(s)	1045
XmaJI	CCTAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	815
XspI	CTAG	5 cut(s)	117, 144, 149, 327, 464
ZraI	GACGTC	1 cut(s)	646
Zsp2I	ATGCAT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.