Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

20952924 .. 20967571

Gene Structure 14648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGACGACATCAAGGCAGTCCTCGATCGCAAGGACCACTGCCTCAACGTCAACAACTCCGATCTCCACTTCTTTGGCGACCTCGGCAATAGGAATGTATATAATGGTGTTAATCCTGGTGTTTACAATAAGCTAATAGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTGTCAAGCTATGATTGACCAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGATGAAGAATACTCCTGATTGCCAGCCTGACGTTTTTGCATATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGCTGCTTACGGAAATCTAAAAAGTAAGAGTCTAGAGAGAATGTTATTTCAAATTGAATTCCATGTAACGAAGTTGCGTGAAAGCCAAGATTGGGAAGCTACTGTTAACTATTGTCAGCGAACTCTTATTATTTGCACTTTCAGTTTTGACACCTCCACATTTGTGTCATTTGAAGAACTATGTATTGGTGGAGCTATCATTGGCAGGTTTCCTGTTTCGATGATGAAGCAGAGGCATAAGATCGAGAGGGAACAGAACATTGGGATGAAGCAGAGGCATAAGATCGAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGAAAGTTGCAAAGGTTGCTTACATAGTCGTGTTACTGGTACCACTATGGCATAAACCGGACGAAAATTTTCTAATTTCGCATGGCTCTGTTAGGCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

6.75

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	609
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	369, 470, 811
AfaI	GTAC	2 cut(s)	345, 786
AfiI	CCNNNNNNNGG	2 cut(s)	255, 505
AgsI	TTSAA	3 cut(s)	464, 470, 587
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	6 cut(s)	582, 614, 657, 689, 699, 731
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	7 cut(s)	133, 173, 181, 191, 416, 512, 608
AluI	AGCT	7 cut(s)	133, 173, 181, 191, 416, 512, 608
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	352
AoxI	GGCC	2 cut(s)	839, 843
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	369, 470, 811
Asp700I	GAANNNNTTC	1 cut(s)	813
Asp718I	GGTACC	1 cut(s)	784
AspS9I	GGNCC	2 cut(s)	34, 735
AvaII	GGWCC	2 cut(s)	34, 735
BanI	GGYRCC	1 cut(s)	784
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	401, 726
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	146, 446
BfuAI	ACCTGC	1 cut(s)	609
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	34, 735
BmgT120I	GGNCC	2 cut(s)	34, 735
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	82, 202
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 505
Bse118I	RCCGGY	1 cut(s)	841
Bse1I	ACTGG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	82, 202
BseGI	GGATG	2 cut(s)	684, 737
BseLI	CCNNNNNNNGG	2 cut(s)	255, 505
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	841, 845
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	803, 842
BslI	CCNNNNNNNGG	2 cut(s)	255, 505
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	841, 845
Bsp143I	GATC	4 cut(s)	25, 61, 654, 696
BspANI	GGCC	2 cut(s)	841, 845
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	786
BspMI	ACCTGC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	1 cut(s)	841
BssECI	CCNNGG	2 cut(s)	82, 202
BssMI	GATC	4 cut(s)	25, 61, 654, 696
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	317, 843
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	684, 737
BstKTI	GATC	4 cut(s)	28, 64, 657, 699
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	25, 61, 654, 696
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 761
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	403
BstXI	CCANNNNNNTGG	2 cut(s)	74, 209
BsuRI	GGCC	2 cut(s)	841, 845
BtsCI	GGATG	2 cut(s)	684, 737
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	609
Cac8I	GCNNGC	2 cut(s)	317, 843
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	841
Cfr13I	GGNCC	2 cut(s)	34, 735
Csp6I	GTAC	2 cut(s)	344, 785
CviAII	CATG	4 cut(s)	142, 221, 476, 827
CviQI	GTAC	2 cut(s)	344, 785
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	4 cut(s)	27, 63, 656, 698
DpnII	GATC	4 cut(s)	25, 61, 654, 696
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	34, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	145, 224, 479, 830
FatI	CATG	4 cut(s)	141, 220, 475, 826
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	691, 744
FseI	GGCCGGCC	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	2 cut(s)	146, 446
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	841, 845
HapII	CCGG	2 cut(s)	803, 842
Hin1II	CATG	4 cut(s)	145, 224, 479, 830
HincII	GTYRAC	2 cut(s)	52, 520
HindII	GTYRAC	2 cut(s)	52, 520
HinfI	GANTC	1 cut(s)	442
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	2 cut(s)	803, 842
Hpy166II	GTNNAC	4 cut(s)	52, 124, 158, 520
Hpy188I	TCNGA	2 cut(s)	61, 361
Hpy188III	TCNNGA	4 cut(s)	308, 446, 658, 700
Hpy8I	GTNNAC	4 cut(s)	52, 124, 158, 520
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	48, 324
HpyCH4V	TGCA	3 cut(s)	332, 549, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 761
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	48, 324
Hsp92II	CATG	4 cut(s)	145, 224, 479, 830
KpnI	GGTACC	1 cut(s)	788
KroI	GCCGGC	1 cut(s)	841
KroNI	GCCGGC	1 cut(s)	843
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	25, 61, 654, 696
LmnI	GCTCC	3 cut(s)	178, 258, 605
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	146, 446
MaeII	ACGT	2 cut(s)	48, 324
MaeIII	GTNAC	2 cut(s)	478, 777
MalI	GATC	4 cut(s)	27, 63, 656, 698
MboI	GATC	4 cut(s)	25, 61, 654, 696
MboII	GAAGA	3 cut(s)	310, 599, 734
MluCI	AATT	5 cut(s)	369, 465, 470, 811, 819
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	709
MroNI	GCCGGC	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	2 cut(s)	111, 519
MslI	CAYNNNNRTG	3 cut(s)	575, 677, 773
MspI	CCGG	2 cut(s)	803, 842
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	84, 761
NaeI	GCCGGC	1 cut(s)	843
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	25, 61, 654, 696
NgoMIV	GCCGGC	1 cut(s)	841
NlaIII	CATG	4 cut(s)	145, 224, 479, 830
NlaIV	GGNNCC	1 cut(s)	786
NmeAIII	GCCGAG	1 cut(s)	63
OliI	CACNNNNGTG	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	843
PdmI	GAANNNNTTC	1 cut(s)	813
PkrI	GCNGC	1 cut(s)	418
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	2 cut(s)	34, 735
PstNI	CAGNNNCTG	1 cut(s)	352
PvuI	CGATCG	1 cut(s)	28
RigI	GGCCGGCC	1 cut(s)	845
RsaI	GTAC	2 cut(s)	345, 786
RsaNI	GTAC	2 cut(s)	344, 785
RseI	CAYNNNNRTG	3 cut(s)	575, 677, 773
SaqAI	TTAA	2 cut(s)	111, 519
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	25, 61, 654, 696
Sau96I	GGNCC	2 cut(s)	34, 735
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	117
SinI	GGWCC	2 cut(s)	34, 735
SmiMI	CAYNNNNRTG	3 cut(s)	575, 677, 773
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	5 cut(s)	369, 465, 470, 811, 819
SspMI	CTAG	2 cut(s)	146, 446
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	51, 327
TaqI	TCGA	4 cut(s)	24, 632, 657, 699
TasI	AATT	5 cut(s)	369, 465, 470, 811, 819
TatI	WGTACW	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	111, 519
Tru9I	TTAA	2 cut(s)	111, 519
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	237, 311, 653, 695
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	34, 735
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	3 cut(s)	369, 470, 811
XbaI	TCTAGA	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	2 cut(s)	146, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.