Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

60910714 .. 60919359

Gene Structure 8646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG430100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTCACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCAGCCTGACGTCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCACATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCATTACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTCCGTCTTATTGAGCTAACAGAGATTGAAGGTTTACAGCTGGCTATATGTTCTGTTCTAGATGTTCTTTTCATCATGCTCTCCAAATTTTCTAAGGGTACATTTTCCAGCCTTCCAATTTTTCACCAAGCAGTTTTCTCCTCAGCAACAAAACCAATTCCTGTAGTTGCAGCGCTCGTATCGTTCATATCTTATTCTCGCAATCCACGAATACAAGTTGGTGCTGCTAGGAACCAGACAGTCGGCACTCCTGCTCGGCGATCGTATCCGACCTCCTCCCCTCGCTTCCCTCCCAAAGCGACACCCCCAGAGACCCGAAGGCCAAGGCGGGCCTACAACTCAAACGATCGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

252

Amino Acids

28.07

Weight (kDa)

9.3

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	30 - 73	2.3e-11	PPR repeat family
PPR_3	PF13812	58 - 110	1.7e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	214
AciI	CCGC	1 cut(s)	730
AcsI	RAATTY	3 cut(s)	270, 366, 488
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	246, 502
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	47, 373, 431
AluBI	AGCT	5 cut(s)	32, 40, 50, 418, 442
AluI	AGCT	5 cut(s)	32, 40, 50, 418, 442
Alw26I	GTCTC	2 cut(s)	128, 707
AlwNI	CAGNNNCTG	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	2 cut(s)	722, 732
ApeKI	GCWGC	2 cut(s)	572, 626
ApoI	RAATTY	3 cut(s)	270, 366, 488
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	518
BbvCI	CCTCAGC	2 cut(s)	33, 544
BbvI	GCAGC	2 cut(s)	584, 613
BccI	CCATC	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	128, 707
BfaI	CTAG	3 cut(s)	5, 461, 630
BfmI	CTRYAG	2 cut(s)	221, 564
BfoI	RGCGCY	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	573, 627
BlsI	GCNGC	2 cut(s)	574, 628
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	1 cut(s)	635
BmsI	GCATC	1 cut(s)	307
Bpu10I	CCTNAGC	2 cut(s)	33, 544
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	725
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	24, 558
BseRI	GAGGAG	3 cut(s)	50, 532, 667
BseXI	GCAGC	2 cut(s)	584, 613
Bsh1285I	CGRYCG	2 cut(s)	665, 751
BshFI	GGCC	2 cut(s)	724, 734
BsiEI	CGRYCG	2 cut(s)	665, 751
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	128, 707
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	724, 734
Bso31I	GGTCTC	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	662, 748
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	2 cut(s)	724, 734
BspCNI	CTCAG	2 cut(s)	25, 557
BspLI	GGNNCC	1 cut(s)	635
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	2 cut(s)	662, 748
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	4 cut(s)	179, 221, 444, 732
BstDEI	CTNAG	3 cut(s)	33, 495, 544
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	665, 751
BstMAI	GTCTC	2 cut(s)	128, 707
BstMBI	GATC	2 cut(s)	662, 748
BstMCI	CGRYCG	2 cut(s)	665, 751
BstSFI	CTRYAG	2 cut(s)	221, 564
BstV1I	GCAGC	2 cut(s)	584, 613
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	724, 734
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	4 cut(s)	179, 221, 444, 732
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	732
Csp6I	GTAC	2 cut(s)	245, 501
CviAII	CATG	3 cut(s)	80, 236, 478
CviQI	GTAC	2 cut(s)	245, 501
DdeI	CTNAG	3 cut(s)	33, 495, 544
DpnI	GATC	2 cut(s)	664, 750
DpnII	GATC	2 cut(s)	662, 748
Eco130I	CCWWGG	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	707
Eco47III	AGCGCT	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	83, 239, 481
FatI	CATG	3 cut(s)	79, 235, 477
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	573, 627
Fsp4HI	GCNGC	2 cut(s)	573, 627
FspBI	CTAG	3 cut(s)	5, 461, 630
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	2 cut(s)	573, 627
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	724, 734
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	83, 239, 481
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	17, 437
Hpy188I	TCNGA	2 cut(s)	262, 672
Hpy188III	TCNNGA	2 cut(s)	170, 461
Hpy8I	GTNNAC	2 cut(s)	17, 437
HpyAV	CCTTC	5 cut(s)	56, 364, 425, 524, 714
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	223, 233, 572
HpyF3I	CTNAG	3 cut(s)	33, 495, 544
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	83, 239, 481
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	662, 748
LmnI	GCTCC	2 cut(s)	37, 117
Lsp1109I	GCAGC	2 cut(s)	584, 613
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	5, 461, 630
MaeII	ACGT	1 cut(s)	186
MalI	GATC	2 cut(s)	664, 750
MboI	GATC	2 cut(s)	662, 748
MboII	GAAGA	1 cut(s)	172
MluCI	AATT	5 cut(s)	270, 366, 488, 519, 558
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	8 cut(s)	28, 155, 215, 553, 685, 688, 693, 702
MspA1I	CMGCKG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	379
NdeII	GATC	2 cut(s)	662, 748
NlaIII	CATG	3 cut(s)	83, 239, 481
NlaIV	GGNNCC	1 cut(s)	635
NmeAIII	GCCGAG	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PctI	GAATGC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	574, 628
Ple19I	CGATCG	2 cut(s)	665, 751
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	732
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	253
PvuI	CGATCG	2 cut(s)	665, 751
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	246, 502
RsaNI	GTAC	2 cut(s)	245, 501
SatI	GCNGC	2 cut(s)	573, 627
Sau3AI	GATC	2 cut(s)	662, 748
Sau96I	GGNCC	1 cut(s)	732
SbfI	CCTGCAGG	1 cut(s)	225
SdaI	CCTGCAGG	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	2 cut(s)	221, 564
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	270, 366, 488, 519, 558
SsiI	CCGC	1 cut(s)	730
SspMI	CTAG	3 cut(s)	5, 461, 630
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	1 cut(s)	189
TasI	AATT	5 cut(s)	270, 366, 488, 519, 558
TatI	WGTACW	1 cut(s)	244
TseI	GCWGC	2 cut(s)	572, 626
TspDTI	ATGAA	5 cut(s)	96, 173, 263, 463, 577
TspGWI	ACGGA	2 cut(s)	339, 395
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	3 cut(s)	270, 366, 488
XbaI	TCTAGA	1 cut(s)	460
XspI	CTAG	3 cut(s)	5, 461, 630
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.