Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

26936841 .. 26939683

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG135300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACCGTCTCCGACCACCAAACTAGCAACTCTTCGGGCACAGACGAAGCCCCATGCTCAACCCACTAGTAATACTAGTGCAGATAACAACGCTAGATTGGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTGAAAGATAAGGAGGCCAAGGACAGAAAGGAGGAGACCAACAAGAAGATAGCTTCTCGGAAAGCAATTTCGGTCTTCTTGCGGAGAGAAGCTGCCGAATCCCACATCGAGAAGAAGAAAGGCTCCAGGAGACTGCTTCCGAGGATTGTGCTCGAAGCCTTCCATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGATTGTGGTTCTGGCATTGAAAGAATCGCAAAAGATCTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

10.86

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	268, 370
AcuI	CTGAAG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	409
AhlI	ACTAGT	2 cut(s)	116, 125
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	18, 178, 239, 278
AluI	AGCT	4 cut(s)	18, 178, 239, 278
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	63, 215, 310
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	3 cut(s)	63, 215, 310
BcuI	ACTAGT	2 cut(s)	116, 125
BfaI	CTAG	4 cut(s)	74, 117, 126, 144
BfrI	CTTAAG	1 cut(s)	13
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	49, 204, 326
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	49, 204, 326
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	5, 203
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	3 cut(s)	63, 215, 310
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	91, 339
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	2 cut(s)	268, 370
BspANI	GGCC	2 cut(s)	5, 203
BspLI	GGNNCC	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	49, 204, 326
BssMI	GATC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	3 cut(s)	63, 215, 310
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	5, 203
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	2 cut(s)	104, 350
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	107, 353
FaiI	YATR	3 cut(s)	105, 351, 433
FatI	CATG	2 cut(s)	103, 349
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	4 cut(s)	74, 117, 126, 144
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	5, 203
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	107, 353
HinfI	GANTC	4 cut(s)	284, 357, 377, 413
HpaII	CCGG	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	63, 183, 246, 327
Hpy188III	TCNNGA	2 cut(s)	295, 388
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
Hsp92II	CATG	2 cut(s)	107, 353
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	51, 298, 325, 386
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	4 cut(s)	74, 117, 126, 144
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	6 cut(s)	74, 244, 253, 310, 313, 418
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	91, 339
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	16, 44, 177, 193, 211, 321
MseI	TTAA	2 cut(s)	14, 45
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	107, 353
NlaIV	GGNNCC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	284, 357, 413
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	14, 45
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	91, 339
SetI	ASST	4 cut(s)	20, 180, 241, 280
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	13, 386
SmoI	CTYRAG	2 cut(s)	13, 386
SpeI	ACTAGT	2 cut(s)	116, 125
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	268, 370
SspMI	CTAG	4 cut(s)	74, 117, 126, 144
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	294, 339
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	284, 357, 413
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XspI	CTAG	4 cut(s)	74, 117, 126, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.