Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

66643670 .. 66644077

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG496000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGTAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCAGCCTGACATCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

5.73

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	30 - 73	7.9e-12	PPR repeat family
PPR	PF01535	30 - 54	2.1e-06	PPR repeat
PPR_3	PF13812	49 - 110	2.6e-10	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	270, 366
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	47, 373
AluBI	AGCT	3 cut(s)	32, 40, 50
AluI	AGCT	3 cut(s)	32, 40, 50
Alw26I	GTCTC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	270, 366
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	179, 221
BstDEI	CTNAG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	179, 221
CaiI	CAGNNNCTG	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	32, 40, 50, 66, 78, 181, 251
CviKI_1	RGCY	7 cut(s)	32, 40, 50, 66, 78, 181, 251
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	83
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	235
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	56, 364
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	223, 233
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	36, 183, 191, 195, 209, 233, 233, 323
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	5
MboII	GAAGA	1 cut(s)	172
MluCI	AATT	2 cut(s)	270, 366
MnlI	CCTC	3 cut(s)	28, 155, 215
Mva1269I	GAATGC	1 cut(s)	379
NdeI	CATATG	1 cut(s)	235
NlaIII	CATG	1 cut(s)	83
PctI	GAATGC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SbfI	CCTGCAGG	1 cut(s)	225
SdaI	CCTGCAGG	1 cut(s)	225
SetI	ASST	6 cut(s)	34, 42, 52, 88, 197, 228
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	270, 366
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	405
TasI	AATT	2 cut(s)	270, 366
TatI	WGTACW	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	96, 173
TspGWI	ACGGA	1 cut(s)	339
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	270, 366
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.