Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

68178162 .. 68179210

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G045030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACCGTTTCCAGCCACCAAACCAGCAACTCTTCGGGCACAGACGAAGCCCCATGCTCAACCCACTAGTAATACCAGTGCAGATAACAACGCTAGACTGGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTGAAAGATAAGGAGGCCAAGGACAGAAAGGAAGAGACCAACAAGAAGATAGCTTATCGGAAAGCAATTTCGGTCTTTTTGCGGAGAGAAGCTACCGAATCCCACATCGAGAAGAAGAAAGGCTCCAGGAGACTGCTTCCGAGGATTGTGCTCGAAGCCCTCCATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGGTCACTCCTTTTTACCTTGGTTTTATTCTGACTTGGAATGTATATAATGGTGTTAATCCTGGTGTTTACAATAAGCTAATAGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAACCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCAGCCTGACGTCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

293

Amino Acids

32.97

Weight (kDa)

9.55

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 231	1.3e-11	PPR repeat family
PPR	PF01535	188 - 212	6.7e-06	PPR repeat
PPR_3	PF13812	207 - 268	1.1e-09	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
Acc36I	ACCTGC	1 cut(s)	688
AciI	CCGC	2 cut(s)	268, 370
AcsI	RAATTY	2 cut(s)	744, 840
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	521, 847
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	311, 448
AluBI	AGCT	8 cut(s)	18, 178, 239, 278, 466, 506, 514, 524
AluI	AGCT	8 cut(s)	18, 178, 239, 278, 466, 506, 514, 524
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	215, 310, 602
AlwNI	CAGNNNCTG	2 cut(s)	187, 727
AoxI	GGCC	2 cut(s)	3, 201
ApoI	RAATTY	2 cut(s)	744, 840
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	776
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	313, 450
BcoDI	GTCTC	3 cut(s)	215, 310, 602
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 144, 479
BfmI	CTRYAG	1 cut(s)	695
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	313, 450
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	313, 450
BmsI	GCATC	1 cut(s)	781
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	371, 644
BsaHI	GRCGYC	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	49, 204, 326, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	126, 153
BseBI	CCWGG	2 cut(s)	313, 450
BseDI	CCNNGG	4 cut(s)	49, 204, 326, 406
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	126, 153
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	5, 203
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	215, 310, 602
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	91, 339
BspACI	CCGC	2 cut(s)	268, 370
BspANI	GGCC	2 cut(s)	5, 203
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	126, 153
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	49, 204, 326, 406
BssNI	GRCGYC	1 cut(s)	660
BssT1I	CCWWGG	2 cut(s)	204, 406
Bst2UI	CCWGG	2 cut(s)	313, 450
Bst4CI	ACNGT	2 cut(s)	57, 879
Bst6I	CTCTTC	2 cut(s)	87, 213
BstACI	GRCGYC	1 cut(s)	660
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	653, 695
BstDEI	CTNAG	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	586
BstMAI	GTCTC	3 cut(s)	215, 310, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	2 cut(s)	313, 450
BstSCI	CCNGG	2 cut(s)	311, 448
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	5, 203
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	653, 695
CaiI	CAGNNNCTG	2 cut(s)	187, 727
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	4 cut(s)	104, 350, 475, 554
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	87, 213
EarI	CTCTTC	2 cut(s)	87, 213
Eco130I	CCWWGG	2 cut(s)	204, 406
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	311, 448
EcoT14I	CCWWGG	2 cut(s)	204, 406
ErhI	CCWWGG	2 cut(s)	204, 406
FaeI	CATG	4 cut(s)	107, 353, 478, 557
FatI	CATG	4 cut(s)	103, 349, 474, 553
FauNDI	CATATG	1 cut(s)	709
FspBI	CTAG	3 cut(s)	117, 144, 479
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	5, 203
HapII	CCGG	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	4 cut(s)	107, 353, 478, 557
HinfI	GANTC	3 cut(s)	284, 357, 377
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	457, 491
Hpy188I	TCNGA	5 cut(s)	183, 246, 327, 420, 736
Hpy188III	TCNNGA	2 cut(s)	295, 644
Hpy8I	GTNNAC	2 cut(s)	457, 491
HpyAV	CCTTC	2 cut(s)	530, 838
HpyCH4III	ACNGT	2 cut(s)	57, 879
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	3 cut(s)	131, 697, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	107, 353, 478, 557
LmnI	GCTCC	3 cut(s)	314, 511, 591
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	3 cut(s)	117, 144, 479
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	2 cut(s)	154, 391
MboII	GAAGA	6 cut(s)	74, 230, 244, 310, 313, 646
MhlI	GDGCHC	2 cut(s)	91, 339
MluCI	AATT	3 cut(s)	252, 744, 840
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	9 cut(s)	16, 44, 177, 193, 321, 356, 502, 629, 689
MseI	TTAA	3 cut(s)	14, 45, 444
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	313, 450
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	313, 450
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NdeI	CATATG	1 cut(s)	709
NlaIII	CATG	4 cut(s)	107, 353, 478, 557
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	2 cut(s)	284, 357
PfoI	TCCNGGA	1 cut(s)	311
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	311, 448
PspGI	CCWGG	2 cut(s)	311, 448
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	2 cut(s)	187, 727
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	14, 45, 444
Sau96I	GGNCC	1 cut(s)	53
SbfI	CCTGCAGG	1 cut(s)	699
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	313, 450
SdaI	CCTGCAGG	1 cut(s)	699
SduI	GDGCHC	2 cut(s)	91, 339
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	695
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	3 cut(s)	13, 386, 623
SmoI	CTYRAG	3 cut(s)	13, 386, 623
SpeI	ACTAGT	1 cut(s)	116
Sse8387I	CCTGCAGG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	252, 744, 840
SsiI	CCGC	2 cut(s)	268, 370
SspMI	CTAG	3 cut(s)	117, 144, 479
StyD4I	CCNGG	2 cut(s)	311, 448
StyI	CCWWGG	2 cut(s)	204, 406
TaaI	ACNGT	2 cut(s)	57, 879
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	2 cut(s)	294, 339
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	252, 744, 840
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	2 cut(s)	284, 357
Tru1I	TTAA	3 cut(s)	14, 45, 444
Tru9I	TTAA	3 cut(s)	14, 45, 444
TscAI	CASTG	2 cut(s)	133, 367
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	570, 647
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	586
XapI	RAATTY	2 cut(s)	744, 840
XspI	CTAG	3 cut(s)	117, 144, 479
ZraI	GACGTC	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.