Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

23348490 .. 23349538

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGTGTTTAACCGAGGACCGTCTCCGGCCACCAAACCAGCAACTCTTCGGGCACAGACGAAGCCCCATGCTCAACCCACTAGTAATACCAGTGCAGATAACAACGCTAGACTGGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTGAAAGATAAGGAGGCCAAGGACAGAAAGGAGGAGACCAACAAAAAGATAGCTTATCGGAAAGCAATTTCGGTCTTTTTGAGGAGAGAAGCTACCCAATCCCACATCGAGAAGAAGAAAGTCTCCAGGAGACTGCTTCCGAGGATTGTCCTCGAAGTCCTCCATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGGTCACTCCTTTTTACCTTGGTTTTATTCTGACTTGGAATGTATATAATGGTGTTAATCCTGGTGTTTACAATAAGCTAATAGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCGGCCTGACGTCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCAGATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

271

Amino Acids

30.6

Weight (kDa)

9.67

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	185 - 246	4.7e-09	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	678, 774
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	1 cut(s)	654
AflII	CTTAAG	1 cut(s)	13
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	521, 781
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	311, 448
AluBI	AGCT	8 cut(s)	18, 178, 239, 278, 466, 506, 514, 524
AluI	AGCT	8 cut(s)	18, 178, 239, 278, 466, 506, 514, 524
Alw26I	GTCTC	4 cut(s)	63, 215, 310, 313
AlwNI	CAGNNNCTG	2 cut(s)	187, 661
AoxI	GGCC	4 cut(s)	3, 63, 201, 587
ApoI	RAATTY	2 cut(s)	678, 774
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	2 cut(s)	313, 450
BcoDI	GTCTC	4 cut(s)	63, 215, 310, 313
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 144, 479
BfmI	CTRYAG	1 cut(s)	629
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	622
Bme1390I	CCNGG	2 cut(s)	313, 450
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	313, 450
BmsI	GCATC	1 cut(s)	715
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	371, 578
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	49, 204, 326, 406
BsaWI	WCCGGW	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	37, 585
Bse1I	ACTGG	2 cut(s)	126, 153
BseBI	CCWGG	2 cut(s)	313, 450
BseDI	CCNNGG	4 cut(s)	49, 204, 326, 406
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	126, 153
BseRI	GAGGAG	3 cut(s)	233, 283, 524
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	5, 65, 203, 589
BshTI	ACCGGT	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	38, 62, 586
BsmAI	GTCTC	4 cut(s)	63, 215, 310, 313
BsmBI	CGTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	4 cut(s)	5, 65, 203, 589
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	4 cut(s)	5, 65, 203, 589
BspCNI	CTCAG	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	633
BspMI	ACCTGC	1 cut(s)	622
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	37, 585
BsrI	ACTGG	2 cut(s)	126, 153
BssAI	RCCGGY	2 cut(s)	37, 585
BssECI	CCNNGG	4 cut(s)	49, 204, 326, 406
BssNI	GRCGYC	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	204, 406
Bst2UI	CCWGG	2 cut(s)	313, 450
Bst4CI	ACNGT	2 cut(s)	57, 813
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	594
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	587, 629
BstDEI	CTNAG	1 cut(s)	507
BstMAI	GTCTC	4 cut(s)	63, 215, 310, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	2 cut(s)	313, 450
BstSCI	CCNGG	2 cut(s)	311, 448
BstSFI	CTRYAG	1 cut(s)	629
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	4 cut(s)	5, 65, 203, 589
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	587, 629
CaiI	CAGNNNCTG	2 cut(s)	187, 661
Cfr10I	RCCGGY	2 cut(s)	37, 585
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	653
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	3 cut(s)	104, 350, 475
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	204, 406
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	311, 448
EcoT14I	CCWWGG	2 cut(s)	204, 406
ErhI	CCWWGG	2 cut(s)	204, 406
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	3 cut(s)	107, 353, 478
FatI	CATG	3 cut(s)	103, 349, 474
FspBI	CTAG	3 cut(s)	117, 144, 479
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	4 cut(s)	5, 65, 203, 589
HapII	CCGG	3 cut(s)	38, 62, 586
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	107, 353, 478
HinfI	GANTC	2 cut(s)	357, 377
HpaII	CCGG	3 cut(s)	38, 62, 586
Hpy166II	GTNNAC	2 cut(s)	457, 491
Hpy188I	TCNGA	5 cut(s)	183, 246, 327, 420, 670
Hpy188III	TCNNGA	2 cut(s)	295, 578
Hpy8I	GTNNAC	2 cut(s)	457, 491
HpyAV	CCTTC	2 cut(s)	530, 772
HpyCH4III	ACNGT	2 cut(s)	57, 813
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	4 cut(s)	131, 545, 631, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	594
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	107, 353, 478
KroI	GCCGGC	1 cut(s)	585
KroNI	GCCGGC	1 cut(s)	587
LmnI	GCTCC	1 cut(s)	511
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	3 cut(s)	117, 144, 479
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	154, 391
MboII	GAAGA	4 cut(s)	74, 310, 313, 580
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	252, 678, 774
MlyI	GAGTC	1 cut(s)	386
MroNI	GCCGGC	1 cut(s)	585
MseI	TTAA	3 cut(s)	14, 45, 444
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	3 cut(s)	38, 62, 586
MspR9I	CCNGG	2 cut(s)	313, 450
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	2 cut(s)	313, 450
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NaeI	GCCGGC	1 cut(s)	587
NgoMIV	GCCGGC	1 cut(s)	585
NlaIII	CATG	3 cut(s)	107, 353, 478
NmuCI	GTSAC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	787
PdiI	GCCGGC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	357
PfoI	TCCNGGA	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	37
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	311, 448
PspGI	CCWGG	2 cut(s)	311, 448
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	633
PstNI	CAGNNNCTG	2 cut(s)	187, 661
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	14, 45, 444
Sau96I	GGNCC	1 cut(s)	53
SbfI	CCTGCAGG	1 cut(s)	633
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	313, 450
SdaI	CCTGCAGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	629
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	3 cut(s)	13, 386, 557
SmoI	CTYRAG	3 cut(s)	13, 386, 557
SpeI	ACTAGT	1 cut(s)	116
Sse8387I	CCTGCAGG	1 cut(s)	633
Sse9I	AATT	3 cut(s)	252, 678, 774
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	3 cut(s)	117, 144, 479
StyD4I	CCNGG	2 cut(s)	311, 448
StyI	CCWWGG	2 cut(s)	204, 406
TaaI	ACNGT	2 cut(s)	57, 813
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	294, 339
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	252, 678, 774
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	14, 45, 444
Tru9I	TTAA	3 cut(s)	14, 45, 444
TscAI	CASTG	2 cut(s)	133, 367
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	678, 774
XspI	CTAG	3 cut(s)	117, 144, 479
ZraI	GACGTC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.