Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

56509863 .. 56517423

Gene Structure 7561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTGCAGAGGAAGCTGAAAGACTTGACCACTTTTTTTGCGAAGGTTGTTCTCCCGAGGGACAAAAGAAGTTGGAGAATTCGCATACTGTCTCCAGACAGTTGGATACAACGAAGTTGCGTGAAAGCCAAGATTGGGAAGCTATTGTTAACTATTGTCAGCGAACTCTTATTATTTGCACTTTCAGTTTTGACACCTCCACATTTGTGTCATTTGAAGAACTATGTATTGGTGGAGCTATCATTGGCAGGTTTCCTGTTTCGATGATGAAGCAGAGGCATAAGATCGAGAGGGAACAGAACATTGGGATGAAGCAGAGGCATAAGATCGAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGAAAGTTGCAAAGTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

132

Amino Acids

15.36

Weight (kDa)

6.9

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	6 cut(s)	213, 245, 288, 320, 330, 362
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	17, 143, 239
AluI	AGCT	3 cut(s)	17, 143, 239
Alw26I	GTCTC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	366
BccI	CCATC	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	315, 368
BseLI	CCNNNNNNNGG	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	285, 327
BspMI	ACCTGC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	285, 327
Bst4CI	ACNGT	2 cut(s)	91, 102
BstF5I	GGATG	2 cut(s)	315, 368
BstKTI	GATC	2 cut(s)	288, 330
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	285, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	315, 368
BveI	ACCTGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	20, 55
CviJI	RGCY	4 cut(s)	17, 129, 143, 239
CviKI_1	RGCY	4 cut(s)	17, 129, 143, 239
DpnI	GATC	2 cut(s)	287, 329
DpnII	GATC	2 cut(s)	285, 327
Eco47I	GGWCC	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	79
FaiI	YATR	5 cut(s)	87, 226, 282, 324, 393
FaqI	GGGAC	1 cut(s)	75
FokI	GGATG	2 cut(s)	322, 375
GsuI	CTGGAG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaI	GTTAAC	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	56, 96, 289, 331
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	91, 102
HpyCH4V	TGCA	3 cut(s)	8, 180, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	285, 327
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	3 cut(s)	109, 235, 270
MalI	GATC	2 cut(s)	287, 329
MboI	GATC	2 cut(s)	285, 327
MboII	GAAGA	2 cut(s)	230, 365
MluCI	AATT	1 cut(s)	79
MmeI	TCCRAC	3 cut(s)	54, 84, 340
MnlI	CCTC	7 cut(s)	4, 52, 208, 270, 285, 312, 327
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	206, 308
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	285, 327
OliI	CACNNNNGTG	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	366
RseI	CAYNNNNRTG	2 cut(s)	206, 308
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	285, 327
Sau96I	GGNCC	1 cut(s)	366
SetI	ASST	6 cut(s)	19, 49, 145, 200, 241, 254
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	206, 308
Sse9I	AATT	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	91, 102
TaqI	TCGA	3 cut(s)	263, 288, 330
TasI	AATT	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	284, 326
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.