Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028716.1

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1660

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ggttccattctcttaggttgttcatcttcctcttcagcgacaggggagatagagtgccctatatccactttctctctcctcctcgccttcaaactagggtcaattgaagagatactgaagacgacggtgtccaagacggcggaggcgaatgtgctgtgctacgccgacgaggcggcgctatgctggaggaggcaggcacgaaagccctataagctcgcacagtcccccaacacaacagtcaaattcatggcctcactcttaagctcaacccaaccacttccaccggcgtttaaccgaggaccttctccggccaccaaacaagcaactcttcagggacagacgaagccccatgctcaacccactagtaataccagtgcagataacaacgctagactggcagtaacacagagaagagcagtagagcttcagaggctgaaagataaggaggccaaggatagaaaggaggagaccaacaagaagatagcttatcggaaagcaatttcggtctttttgcggagagaagctgccgaatcccacatcgagaagaagaaaggctccaggagactgcttccggggattgtgctcgaagccctccatgagagaatcactgctctgcggtgggagtctgctctcaaggtcactcctttttaccttggttttattctgacttggttttcgagaattgggaatgtatataatggtgttaatcctggtgtttacaataagctaatagtcatgctaggaaaatgtaaacaaccagaaaaagctgaggagctttttcaatctatgattgacgaaggctgtggtgtcagccatgaaccttatactgctcttatatctgcctatggtaggagcagtctctttgacaaagcattttccctccttgagcagatgaagaatactcctgattgccagcctgacgtccatacctattctatcctcataaaatcttgcctgcaggtttttgcatatgacaaagtacaggctctgctttcagatatggaaattcagcacattagacccaacaccatcacatacaataccctgatagatgcttacggaaatctaaaaagtattgcccacttatccttcctatccaaaattttgaatgctattttagttgctgtgaataatctattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

380

Amino Acids

42.17

Weight (kDa)

9.35

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AatII	GACGTC	1 cut(s)	924
Acc36I	ACCTGC	1 cut(s)	949
AciI	CCGC	4 cut(s)	140, 173, 514, 616
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	242, 1005, 1101
AcuI	CTGAAG	4 cut(s)	18, 137, 314, 410
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	1 cut(s)	981
AfiI	CCNNNNNNNGG	1 cut(s)	849
AflII	CTTAAG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	91, 107, 782, 1108
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	557, 709
AluBI	AGCT	8 cut(s)	214, 264, 424, 485, 524, 727, 767, 775
AluI	AGCT	8 cut(s)	214, 264, 424, 485, 524, 727, 767, 775
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	461, 556, 863
AlwNI	CAGNNNCTG	2 cut(s)	433, 988
AoxI	GGCC	3 cut(s)	249, 309, 447
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	3 cut(s)	242, 1005, 1101
ArsI	GACNNNNNNTTYG	2 cut(s)	658, 690
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	1037
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	559, 711
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	461, 556, 863
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	4 cut(s)	95, 363, 390, 740
BfmI	CTRYAG	1 cut(s)	956
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	949
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	174, 525
BlsI	GCNGC	2 cut(s)	175, 526
Bme1390I	CCNGG	3 cut(s)	559, 573, 711
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	4, 556
BmrFI	CCNGG	3 cut(s)	559, 573, 711
BmsI	GCATC	1 cut(s)	1042
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	2 cut(s)	205, 541
Bpu10I	CCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	2 cut(s)	617, 905
BpuMI	CCSGG	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	295, 450, 572, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	849
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	372, 399
BseBI	CCWGG	2 cut(s)	559, 711
BseDI	CCNNGG	4 cut(s)	295, 450, 572, 652
BseLI	CCNNNNNNNGG	1 cut(s)	849
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	2 cut(s)	372, 399
BseRI	GAGGAG	5 cut(s)	68, 71, 202, 479, 785
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	251, 311, 449
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	3 cut(s)	284, 308, 572
BslFI	GGGAC	2 cut(s)	208, 348
BslI	CCNNNNNNNGG	1 cut(s)	849
BsmAI	GTCTC	3 cut(s)	461, 556, 863
BsmFI	GGGAC	2 cut(s)	208, 348
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	3 cut(s)	251, 311, 449
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	59, 585
BspACI	CCGC	4 cut(s)	140, 173, 514, 616
BspANI	GGCC	3 cut(s)	251, 311, 449
BspCNI	CTCAG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	4, 556
BspMAI	CTGCAG	1 cut(s)	960
BspMI	ACCTGC	1 cut(s)	949
BspQI	GCTCTTC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	372, 399
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	4 cut(s)	295, 450, 572, 652
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	450, 652
Bst2UI	CCWGG	2 cut(s)	559, 711
Bst4CI	ACNGT	3 cut(s)	127, 222, 238
Bst6I	CTCTTC	4 cut(s)	37, 102, 333, 406
BstACI	GRCGYC	1 cut(s)	921
BstAFI	CTTAAG	1 cut(s)	259
BstC8I	GCNNGC	4 cut(s)	195, 216, 914, 956
BstDEI	CTNAG	2 cut(s)	13, 768
BstENI	CCTNNNNNAGG	1 cut(s)	847
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	3 cut(s)	461, 556, 863
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 211, 395, 430
BstNI	CCWGG	2 cut(s)	559, 711
BstSCI	CCNGG	3 cut(s)	557, 571, 709
BstSFI	CTRYAG	1 cut(s)	956
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	251, 311, 449
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	379, 606
BveI	ACCTGC	1 cut(s)	949
Cac8I	GCNNGC	4 cut(s)	195, 216, 914, 956
CaiI	CAGNNNCTG	2 cut(s)	433, 988
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	980
CviAII	CATG	5 cut(s)	247, 350, 596, 736, 815
CviQI	GTAC	1 cut(s)	980
DdeI	CTNAG	2 cut(s)	13, 768
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	4 cut(s)	37, 102, 333, 406
EarI	CTCTTC	4 cut(s)	37, 102, 333, 406
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	450, 652
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	4 cut(s)	18, 137, 314, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	847
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	557, 709
EcoT14I	CCWWGG	2 cut(s)	450, 652
ErhI	CCWWGG	2 cut(s)	450, 652
FaeI	CATG	5 cut(s)	250, 353, 599, 739, 818
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	2 cut(s)	208, 348
FatI	CATG	5 cut(s)	246, 349, 595, 735, 814
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	2 cut(s)	174, 525
Fsp4HI	GCNGC	2 cut(s)	174, 525
FspBI	CTAG	4 cut(s)	95, 363, 390, 740
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	174, 525
GsuI	CTGGAG	2 cut(s)	205, 541
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	251, 311, 449
HapII	CCGG	3 cut(s)	284, 308, 572
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	5 cut(s)	250, 353, 599, 739, 818
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	530, 603, 623
HpaII	CCGG	3 cut(s)	284, 308, 572
Hpy166II	GTNNAC	2 cut(s)	718, 752
Hpy188I	TCNGA	4 cut(s)	429, 492, 666, 997
Hpy188III	TCNNGA	3 cut(s)	541, 678, 905
Hpy8I	GTNNAC	2 cut(s)	718, 752
Hpy99I	CGWCG	2 cut(s)	127, 170
HpyAV	CCTTC	4 cut(s)	97, 312, 791, 1099
HpyCH4III	ACNGT	3 cut(s)	127, 222, 238
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	3 cut(s)	377, 958, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 211, 395, 430
HpyF3I	CTNAG	2 cut(s)	13, 768
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	5 cut(s)	250, 353, 599, 739, 818
HspAI	GCGC	1 cut(s)	176
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	560, 772, 852
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	1042
MaeI	CTAG	4 cut(s)	95, 363, 390, 740
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	2 cut(s)	400, 637
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	59, 585
MluCI	AATT	6 cut(s)	102, 242, 498, 681, 1005, 1101
MlyI	GAGTC	1 cut(s)	632
MseI	TTAA	3 cut(s)	260, 291, 705
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	3 cut(s)	284, 308, 572
MspR9I	CCNGG	3 cut(s)	559, 573, 711
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	2 cut(s)	559, 711
MwoI	GCNNNNNNNGC	4 cut(s)	170, 211, 395, 430
NciI	CCSGG	1 cut(s)	573
NdeI	CATATG	1 cut(s)	970
NlaIII	CATG	5 cut(s)	250, 353, 599, 739, 818
NlaIV	GGNNCC	2 cut(s)	4, 556
NmuCI	GTSAC	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	2 cut(s)	530, 603
PflFI	GACNNNGTC	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	175, 526
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	557, 709
PspGI	CCWGG	2 cut(s)	557, 709
PspN4I	GGNNCC	2 cut(s)	4, 556
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	960
PstNI	CAGNNNCTG	2 cut(s)	433, 988
PsyI	GACNNNGTC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	981
RsaNI	GTAC	1 cut(s)	980
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	260, 291, 705
SatI	GCNGC	2 cut(s)	174, 525
Sau96I	GGNCC	1 cut(s)	299
SbfI	CCTGCAGG	1 cut(s)	960
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	3 cut(s)	559, 573, 711
SdaI	CCTGCAGG	1 cut(s)	960
SduI	GDGCHC	2 cut(s)	59, 585
SfaNI	GCATC	1 cut(s)	1042
SfcI	CTRYAG	1 cut(s)	956
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	259, 632, 884
SmoI	CTYRAG	3 cut(s)	259, 632, 884
SpeI	ACTAGT	1 cut(s)	362
Sse8387I	CCTGCAGG	1 cut(s)	960
Sse9I	AATT	6 cut(s)	102, 242, 498, 681, 1005, 1101
SsiI	CCGC	4 cut(s)	140, 173, 514, 616
SspMI	CTAG	4 cut(s)	95, 363, 390, 740
StyD4I	CCNGG	3 cut(s)	557, 571, 709
StyI	CCWWGG	2 cut(s)	450, 652
TaaI	ACNGT	3 cut(s)	127, 222, 238
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	3 cut(s)	540, 585, 677
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	6 cut(s)	102, 242, 498, 681, 1005, 1101
TatI	WGTACW	1 cut(s)	979
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	530, 603
Tru1I	TTAA	3 cut(s)	260, 291, 705
Tru9I	TTAA	3 cut(s)	260, 291, 705
TscAI	CASTG	2 cut(s)	379, 613
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	4 cut(s)	12, 235, 831, 908
TspGWI	ACGGA	1 cut(s)	1074
TspRI	CASTG	2 cut(s)	379, 613
Tth111I	GACNNNGTC	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	847
XapI	RAATTY	3 cut(s)	242, 1005, 1101
XspI	CTAG	4 cut(s)	95, 363, 390, 740
ZraI	GACGTC	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.