Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Reverse (-)

13609936 .. 13612656

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGCCTCACTCCTGAGCTCCACCCAACCTCTTCCACCGGCGTTTAACCGAGGACCGGCAACTCTACGGGCACAGACGACGCCCCATCCTCAACCCACTTCTAACACTAGTGCAGATAACAACGCTAGACTAGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTAAAAGACAAGGTGGCCAAGGACAGAAAGGAGGAGACCAACAACAAGATAGCTTCTCGGAAAGCAATATCGGTCGTTTTGCGGAGAGAAGCTACCAAATCCCACATCGAGAAGAAGAAAGGCTCCAAGAGACTGCTTCCCAGGACTGTGCTTGAAGCCCTCCATGAGAGAATCACTGCTCTGCGATGGGAGTCTGCTCTCAAGGTTTTTGAACTACTACAAGAGCAGCTCTGGTACCGGCCCAATCCTGGTGTTTACAATAAGCTAATTGTCATGCTAGGAAAATGTAAACAACCAGAAAAAGCTGAGGAGCTTTTTCAAGCTATGATTGACGAAGGCTGTGGTGTCAGCCATGAATCTTATACTGCTCTTATATCTGCCTATGGTAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGACTGCCAGCCTGATGTCCATACTTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCATATGACAGAGTGCAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATCGATGCTTACGGGAAATCTAAAAAATTTGCAGAGATGGAGTCGACACTTGTGGCAATGCTTAGCCAACAGGATTGTGAGCCTGATGTCTGGACCATGAATTCCGTAGTGAGAGCCTTTGGCAGCAGTGGGCAAATAGAAACAATGGAGAAATGTTTTGAGAAGTTCCACAGTGCCGGAATCCAACCAAACATCATGACTTTCAACATTCTCCTCGATTCATATGGAAAAGCTGGGAATTATAAAAAAATGAGTGCTGTGATGGAATACATGCAGAAATACCATTACTCATGGACAATCGTTACATACAATGTGGTGATAGATGCATTTGGGAGGGCTGGGGATTTAACACAAATGGAGTACCTGTTTAGGCTAATGCGTTCAGAGCGGATCAAACCAAGCTGTGTCACACTTTGCTCACTCGTAAGGGCTTATGGGAAAGCAGGTATACCTGAAAAAATTAGTGGTGTTTTACGTTTTGTGGAGAATTCAGACGTGATATTGGATACTGTGTTTTTCAATTGTCTGGTTGATGCTTATGGGAGGCTGGGATGCTTCACAGAAATGAAGGGGGTGCTTGAGATAATGAAGCAAAAAGGATGTTCTCCTGATAAGATCACATATAGAACCATGATTAAAGCTTATTCATTCAACAATATGACTGGCCATGTGAAGGAACTCCATGAACTTATGCAATCGGCAGGAGGTCAGATGACTTGGTCACAGAGACAAAAACCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

499

Amino Acids

56.62

Weight (kDa)

9.12

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	137 - 184	7.8e-07	PPR repeat family
PPR_2	PF13041	176 - 220	6.6e-12	PPR repeat family
PPR	PF01535	176 - 201	3e-06	PPR repeat
PPR_3	PF13812	196 - 257	1.3e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	224 - 356	2.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	243 - 291	3.4e-08	PPR repeat family
PPR_3	PF13812	272 - 328	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	279 - 327	3.4e-08	PPR repeat family
PPR_3	PF13812	304 - 362	4.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	351 - 397	6.3e-08	PPR repeat family
TPR_24	PF23276	397 - 467	6.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	420 - 466	7e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
Acc36I	ACCTGC	2 cut(s)	655, 1187
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AccBSI	CCGCTC	1 cut(s)	1141
AccI	GTMKAC	2 cut(s)	797, 1201
AciI	CCGC	2 cut(s)	250, 1141
AclWI	GGATC	1 cut(s)	1151
AcoI	YGGCCR	2 cut(s)	183, 1417
AcsI	RAATTY	4 cut(s)	711, 779, 853, 1240
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	2 cut(s)	404, 1115
AfiI	CCNNNNNNNGG	4 cut(s)	55, 416, 555, 1426
AgsI	TTSAA	6 cut(s)	323, 380, 488, 958, 1273, 1405
AhlI	ACTAGT	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	1249
AjnI	CCWGG	2 cut(s)	308, 415
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	4 cut(s)	197, 292, 569, 1474
AlwI	GGATC	1 cut(s)	1151
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	4 cut(s)	3, 183, 407, 1417
ApeKI	GCWGC	2 cut(s)	394, 876
ApoI	RAATTY	4 cut(s)	711, 779, 853, 1240
Asp718I	GGTACC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	53, 408, 846
AsuHPI	GGTGA	1 cut(s)	1081
AvaII	GGWCC	2 cut(s)	53, 846
BaeGI	GKGCMC	1 cut(s)	73
BalI	TGGCCA	2 cut(s)	185, 1419
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	406, 888
BccI	CCATC	5 cut(s)	93, 348, 743, 784, 1009
BciT130I	CCWGG	2 cut(s)	310, 417
BciVI	GTATCC	1 cut(s)	1252
BcoDI	GTCTC	4 cut(s)	197, 292, 569, 1474
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	4 cut(s)	108, 126, 131, 446
BfmI	CTRYAG	1 cut(s)	662
BfuAI	ACCTGC	2 cut(s)	655, 1187
BfuI	GTATCC	1 cut(s)	1252
BisI	GCNGC	2 cut(s)	395, 877
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	2 cut(s)	396, 878
Bme1390I	CCNGG	2 cut(s)	310, 417
Bme18I	GGWCC	2 cut(s)	53, 846
BmgBI	CACGTC	1 cut(s)	1249
BmgT120I	GGNCC	3 cut(s)	53, 408, 846
BmiI	GGNNCC	2 cut(s)	292, 404
BmrFI	CCNGG	2 cut(s)	310, 417
BmsI	GCATC	4 cut(s)	748, 1066, 1276, 1295
Bpu10I	CCTNAGC	2 cut(s)	14, 474
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	3 cut(s)	353, 611, 1352
Bsa29I	ATCGAT	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	49, 186, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	1103, 1133
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 416, 555, 1426
Bse118I	RCCGGY	3 cut(s)	37, 55, 405
Bse1I	ACTGG	1 cut(s)	1420
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	310, 417
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	49, 186, 308
BseGI	GGATG	3 cut(s)	85, 1310, 1358
BseLI	CCNNNNNNNGG	4 cut(s)	55, 416, 555, 1426
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	5, 465
BseNI	ACTGG	1 cut(s)	1420
BseRI	GAGGAG	3 cut(s)	215, 491, 956
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	406, 888
BseYI	CCCAGC	3 cut(s)	986, 1091, 1300
BsgI	GTGCAG	2 cut(s)	132, 707
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	4 cut(s)	5, 185, 409, 1419
BshNI	GGYRCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	4 cut(s)	38, 56, 406, 930
BslI	CCNNNNNNNGG	4 cut(s)	55, 416, 555, 1426
BsmAI	GTCTC	4 cut(s)	197, 292, 569, 1474
BsnI	GGCC	4 cut(s)	5, 185, 409, 1419
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	20, 73
Bsp143I	GATC	3 cut(s)	753, 1143, 1368
Bsp1720I	GCTNAGC	1 cut(s)	815
BspACI	CCGC	2 cut(s)	250, 1141
BspANI	GGCC	4 cut(s)	5, 185, 409, 1419
BspCNI	CTCAG	2 cut(s)	6, 466
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	2 cut(s)	292, 404
BspMAI	CTGCAG	1 cut(s)	666
BspMI	ACCTGC	2 cut(s)	655, 1187
BspPI	GGATC	1 cut(s)	1151
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	1141
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	3 cut(s)	37, 55, 405
BsrI	ACTGG	1 cut(s)	1420
BssAI	RCCGGY	3 cut(s)	37, 55, 405
BssECI	CCNNGG	3 cut(s)	49, 186, 308
BssMI	GATC	3 cut(s)	753, 1143, 1368
BssNAI	GTATAC	1 cut(s)	1202
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	1202
Bst2UI	CCWGG	2 cut(s)	310, 417
Bst4CI	ACNGT	3 cut(s)	316, 926, 1264
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	620, 662, 690
BstDEI	CTNAG	3 cut(s)	14, 474, 815
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstF5I	GGATG	3 cut(s)	85, 1310, 1358
BstKTI	GATC	3 cut(s)	756, 1146, 1371
BstMAI	GTCTC	4 cut(s)	197, 292, 569, 1474
BstMBI	GATC	3 cut(s)	753, 1143, 1368
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 166, 694, 1138
BstNI	CCWGG	2 cut(s)	310, 417
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	2 cut(s)	308, 415
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	406, 888
BstZ17I	GTATAC	1 cut(s)	1202
Bsu15I	ATCGAT	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	1252
BsuRI	GGCC	4 cut(s)	5, 185, 409, 1419
BsuTUI	ATCGAT	1 cut(s)	756
BtgZI	GCGATG	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	1249
BtsCI	GGATG	3 cut(s)	85, 1310, 1358
BtsI	GCAGTG	2 cut(s)	342, 886
BtsIMutI	CAGTG	3 cut(s)	342, 886, 931
BveI	ACCTGC	2 cut(s)	655, 1187
Cac8I	GCNNGC	3 cut(s)	620, 662, 690
CaiI	CAGNNNCTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	948
Cfr10I	RCCGGY	3 cut(s)	37, 55, 405
Cfr13I	GGNCC	3 cut(s)	53, 408, 846
ClaI	ATCGAT	1 cut(s)	756
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	403, 1114
CviQI	GTAC	2 cut(s)	403, 1114
DdeI	CTNAG	3 cut(s)	14, 474, 815
DpnI	GATC	3 cut(s)	755, 1145, 1370
DpnII	GATC	3 cut(s)	753, 1143, 1368
EaeI	YGGCCR	2 cut(s)	183, 1417
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	53, 846
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoRI	GAATTC	2 cut(s)	853, 1240
EcoRII	CCWGG	2 cut(s)	308, 415
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	1081
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	186
FauNDI	CATATG	2 cut(s)	676, 976
FblI	GTMKAC	2 cut(s)	797, 1201
Fnu4HI	GCNGC	2 cut(s)	395, 877
FokI	GGATG	3 cut(s)	72, 1317, 1365
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	395, 877
FspBI	CTAG	4 cut(s)	108, 126, 131, 446
GluI	GCNGC	2 cut(s)	395, 877
GsaI	CCCAGC	3 cut(s)	990, 1095, 1304
HaeIII	GGCC	4 cut(s)	5, 185, 409, 1419
HapII	CCGG	4 cut(s)	38, 56, 406, 930
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	1392
HinfI	GANTC	6 cut(s)	339, 359, 524, 794, 933, 971
HpaII	CCGG	4 cut(s)	38, 56, 406, 930
HphI	GGTGA	1 cut(s)	1081
Hpy166II	GTNNAC	4 cut(s)	424, 458, 798, 1202
Hpy188I	TCNGA	6 cut(s)	165, 228, 703, 1138, 1246, 1464
Hpy188III	TCNNGA	6 cut(s)	13, 277, 611, 844, 949, 1361
Hpy8I	GTNNAC	4 cut(s)	424, 458, 798, 1202
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	497, 1315, 1420
HpyCH4III	ACNGT	3 cut(s)	316, 926, 1264
HpyCH4IV	ACGT	2 cut(s)	1228, 1248
HpyCH4V	TGCA	8 cut(s)	113, 664, 674, 688, 785, 1027, 1079, 1447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 166, 694, 1138
HpyF3I	CTNAG	3 cut(s)	14, 474, 815
HpySE526I	ACGT	2 cut(s)	1228, 1248
Hsp92I	GRCGYC	1 cut(s)	80
KpnI	GGTACC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	753, 1143, 1368
LmnI	GCTCC	4 cut(s)	23, 296, 478, 558
Lsp1109I	GCAGC	2 cut(s)	406, 888
LweI	GCATC	4 cut(s)	748, 1066, 1276, 1295
MaeI	CTAG	4 cut(s)	108, 126, 131, 446
MaeII	ACGT	2 cut(s)	1228, 1248
MaeIII	GTNAC	4 cut(s)	136, 1054, 1159, 1473
MalI	GATC	3 cut(s)	755, 1145, 1370
MbiI	CCGCTC	1 cut(s)	1141
MboI	GATC	3 cut(s)	753, 1143, 1368
MboII	GAAGA	4 cut(s)	23, 292, 295, 613
MfeI	CAATTG	1 cut(s)	1273
MhlI	GDGCHC	2 cut(s)	20, 73
MlsI	TGGCCA	2 cut(s)	185, 1419
MluCI	AATT	8 cut(s)	435, 711, 779, 853, 991, 1212, 1240, 1273
MluNI	TGGCCA	2 cut(s)	185, 1419
MlyI	GAGTC	2 cut(s)	368, 803
MmeI	TCCRAC	1 cut(s)	961
Mox20I	TGGCCA	2 cut(s)	185, 1419
Mph1103I	ATGCAT	1 cut(s)	1081
MscI	TGGCCA	2 cut(s)	185, 1419
MseI	TTAA	3 cut(s)	45, 1100, 1389
MslI	CAYNNNNRTG	1 cut(s)	1316
Msp20I	TGGCCA	2 cut(s)	185, 1419
MspI	CCGG	4 cut(s)	38, 56, 406, 930
MspR9I	CCNGG	2 cut(s)	310, 417
MunI	CAATTG	1 cut(s)	1273
MvaI	CCWGG	2 cut(s)	310, 417
MwoI	GCNNNNNNNGC	4 cut(s)	131, 166, 694, 1138
NdeI	CATATG	2 cut(s)	676, 976
NdeII	GATC	3 cut(s)	753, 1143, 1368
NlaIV	GGNNCC	2 cut(s)	292, 404
NmuCI	GTSAC	2 cut(s)	1159, 1473
NsiI	ATGCAT	1 cut(s)	1081
NspI	RCATGY	1 cut(s)	1027
PagI	TCATGA	1 cut(s)	948
PfeI	GAWTC	4 cut(s)	339, 524, 933, 971
PflFI	GACNNNGTC	1 cut(s)	1471
PkrI	GCNGC	2 cut(s)	396, 878
PleI	GAGTC	2 cut(s)	367, 802
PpsI	GAGTC	2 cut(s)	367, 802
PsiI	TTATAA	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	308, 415
PspFI	CCCAGC	3 cut(s)	986, 1091, 1300
PspGI	CCWGG	2 cut(s)	308, 415
PspN4I	GGNNCC	2 cut(s)	292, 404
PspPI	GGNCC	3 cut(s)	53, 408, 846
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	694
PsyI	GACNNNGTC	1 cut(s)	1471
RsaI	GTAC	2 cut(s)	404, 1115
RsaNI	GTAC	2 cut(s)	403, 1114
RseI	CAYNNNNRTG	1 cut(s)	1316
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	796
SaqAI	TTAA	3 cut(s)	45, 1100, 1389
SatI	GCNGC	2 cut(s)	395, 877
Sau3AI	GATC	3 cut(s)	753, 1143, 1368
Sau96I	GGNCC	3 cut(s)	53, 408, 846
SbfI	CCTGCAGG	1 cut(s)	666
SchI	GAGTC	2 cut(s)	368, 803
ScrFI	CCNGG	2 cut(s)	310, 417
SdaI	CCTGCAGG	1 cut(s)	666
SduI	GDGCHC	2 cut(s)	20, 73
SfaNI	GCATC	4 cut(s)	748, 1066, 1276, 1295
SfcI	CTRYAG	1 cut(s)	662
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	53, 846
SmiMI	CAYNNNNRTG	1 cut(s)	1316
SmlI	CTYRAG	3 cut(s)	368, 590, 1331
SmoI	CTYRAG	3 cut(s)	368, 590, 1331
SpeI	ACTAGT	1 cut(s)	107
Sse8387I	CCTGCAGG	1 cut(s)	666
Sse9I	AATT	8 cut(s)	435, 711, 779, 853, 991, 1212, 1240, 1273
SsiI	CCGC	2 cut(s)	250, 1141
SspMI	CTAG	4 cut(s)	108, 126, 131, 446
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	308, 415
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	316, 926, 1264
TaiI	ACGT	2 cut(s)	1231, 1251
TaqI	TCGA	4 cut(s)	276, 756, 797, 969
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	8 cut(s)	435, 711, 779, 853, 991, 1212, 1240, 1273
TfiI	GAWTC	4 cut(s)	339, 524, 933, 971
Tru1I	TTAA	3 cut(s)	45, 1100, 1389
Tru9I	TTAA	3 cut(s)	45, 1100, 1389
TscAI	CASTG	3 cut(s)	349, 886, 931
TseFI	GTSAC	2 cut(s)	1159, 1473
TseI	GCWGC	2 cut(s)	394, 876
Tsp45I	GTSAC	2 cut(s)	1159, 1473
TspDTI	ATGAA	8 cut(s)	537, 614, 866, 963, 1334, 1355, 1389, 1452
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	3 cut(s)	349, 886, 931
Tth111I	GACNNNGTC	1 cut(s)	1471
VpaK11BI	GGWCC	2 cut(s)	53, 846
XagI	CCTNNNNNAGG	1 cut(s)	553
XapI	RAATTY	4 cut(s)	711, 779, 853, 1240
XceI	RCATGY	1 cut(s)	1027
XmiI	GTMKAC	2 cut(s)	797, 1201
XspI	CTAG	4 cut(s)	108, 126, 131, 446
Zsp2I	ATGCAT	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.