Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

22945667 .. 22946714

Gene Structure 1048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACCGTCTCCGGCCACCAAACCAGCAACTCTTCGGGCACAGACGAAGCCCCATGCTCAACCCACTAGTAATACCAGTGCAGATAACAACGCTAGACTGGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTGAAAGATAAGGAGGCCAAGGACAGAAAGGAAGAGACCAACAAAAAGATAGCTTATCGGAAAGCAATTTCGGTCTTTTTGAGGAGAGAAGCTACCCAATCCCACATCGAGAAGAAGAAAGTCTCCAGGAGACTGCTTCCGAGGATTGTCCTCGAAGTCCTCCATGAGAGAATCACTGCTCTGCGGTGGAATCTGCTCTCAAGGAGCAGTCTCTTTGACAAAGCATTTTCCCTCCTTGAGCAGATGAAGAATACTCCTGATTGCCAGCCTGACGTCCATACCTATTCTATCCTCATAAAATCTTGCCTGCAGGTTTTTGCAGATGACAAAGTACAGGCTCTGCTTTCAGATATGGAAATTCAGCACATTAGACCCAACACCATCACATACAATACCCTGATAGATGCTTACGGAAATCTAAAAAGTATTGCCCACTTATCCTTCCTATCCAAAATTTTGAATGCTATTTTAGTTGCTGTGAATAATCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

226

Amino Acids

25.52

Weight (kDa)

10.04

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	128 - 164	4.3e-08	PPR repeat family
PPR_3	PF13812	140 - 201	1.8e-09	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	462
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	543, 639
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	519
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	646
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	18, 178, 239, 278
AluI	AGCT	4 cut(s)	18, 178, 239, 278
Alw26I	GTCTC	5 cut(s)	63, 215, 310, 313, 401
AlwNI	CAGNNNCTG	2 cut(s)	187, 526
AoxI	GGCC	3 cut(s)	3, 63, 201
ApoI	RAATTY	2 cut(s)	543, 639
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	91
BccI	CCATC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	5 cut(s)	63, 215, 310, 313, 401
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 144
BfmI	CTRYAG	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	580
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	370, 443
BsaHI	GRCGYC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	49, 204, 326
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	126, 153
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	49, 204, 326
BseNI	ACTGG	2 cut(s)	126, 153
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	5, 65, 203
BsiSI	CCGG	2 cut(s)	38, 62
BsmAI	GTCTC	5 cut(s)	63, 215, 310, 313, 401
BsmBI	CGTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	5, 65, 203
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	3 cut(s)	5, 65, 203
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	126, 153
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	49, 204, 326
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	57, 678
Bst6I	CTCTTC	2 cut(s)	87, 213
BstACI	GRCGYC	1 cut(s)	459
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	452, 494
BstMAI	GTCTC	5 cut(s)	63, 215, 310, 313, 401
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	5, 65, 203
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	452, 494
CaiI	CAGNNNCTG	2 cut(s)	187, 526
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	2 cut(s)	104, 350
CviQI	GTAC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	87, 213
EarI	CTCTTC	2 cut(s)	87, 213
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	107, 353
FaiI	YATR	6 cut(s)	105, 351, 465, 482, 539, 574
FatI	CATG	2 cut(s)	103, 349
FspBI	CTAG	2 cut(s)	117, 144
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	5, 65, 203
HapII	CCGG	2 cut(s)	38, 62
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	107, 353
HinfI	GANTC	2 cut(s)	357, 376
HpaII	CCGG	2 cut(s)	38, 62
Hpy188I	TCNGA	4 cut(s)	183, 246, 327, 535
Hpy188III	TCNNGA	2 cut(s)	295, 443
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	2 cut(s)	57, 678
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	131, 496, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	107, 353
LmnI	GCTCC	1 cut(s)	390
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	117, 144
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	5 cut(s)	74, 230, 310, 313, 445
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	252, 543, 639
MseI	TTAA	2 cut(s)	14, 45
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	2 cut(s)	38, 62
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NlaIII	CATG	2 cut(s)	107, 353
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	357, 376
PfoI	TCCNGGA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	498
PstNI	CAGNNNCTG	2 cut(s)	187, 526
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
SaqAI	TTAA	2 cut(s)	14, 45
Sau96I	GGNCC	1 cut(s)	53
SbfI	CCTGCAGG	1 cut(s)	498
ScrFI	CCNGG	1 cut(s)	313
SdaI	CCTGCAGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	20, 180, 241, 280, 462, 470, 501
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	494
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	3 cut(s)	13, 385, 422
SmoI	CTYRAG	3 cut(s)	13, 385, 422
SpeI	ACTAGT	1 cut(s)	116
Sse8387I	CCTGCAGG	1 cut(s)	498
Sse9I	AATT	3 cut(s)	252, 543, 639
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	117, 144
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	57, 678
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	294, 339
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	252, 543, 639
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	2 cut(s)	357, 376
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TscAI	CASTG	2 cut(s)	133, 367
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	543, 639
XspI	CTAG	2 cut(s)	117, 144
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.