Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

59980117 .. 59980548

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG365000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACCGTCTCCGGCCACCAAACGAGCAACTCTTCGGGCACAGATGAAGCCCCATGCTCAACCCACCAGTAATACCAGTGCAGATAACAATGCTAGACTGGCAGTAACACAGAGAAAAAAAATAGAGCTTCAGAGGCTGAAAGATAAGGAGGCCAAGGACAGGAAGGAGGAGACCAACAAGAAGATAGCTTCTCAAAAAGCAATTTTGGTCGTTTTGAGGAGAGAAGCTACCGAATCCCACCTCGAGAAGAAGAAAGGCTCTAGGAGACTGCTTCCAAGGATTGTGCTCGAAGCCCTCCATGTGAGAATCACTGCTCTGCTGTGGGAGTCTGCTCTCAAGGGCACTCCTTTTTACCTTGGTTTTCGAGAATTAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.06

Weight (kDa)

10.86

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflII	CTTAAG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	18, 178, 239, 278
AluI	AGCT	4 cut(s)	18, 178, 239, 278
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	63, 215, 310
AlwNI	CAGNNNCTG	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	3 cut(s)	3, 63, 201
AspS9I	GGNCC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	2 cut(s)	91, 395
Bbv12I	GWGCWC	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	63, 215, 310
BfaI	CTAG	2 cut(s)	144, 312
BfrI	CTTAAG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	49, 204, 326, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	117, 126, 153
BseDI	CCNNGG	4 cut(s)	49, 204, 326, 406
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	117, 126, 153
BseRI	GAGGAG	2 cut(s)	233, 283
BseSI	GKGCMC	2 cut(s)	91, 395
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	5, 65, 203
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	38, 62
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	63, 215, 310
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	5, 65, 203
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	91, 339, 395
BspANI	GGCC	3 cut(s)	5, 65, 203
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	117, 126, 153
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	49, 204, 326, 406
BssT1I	CCWWGG	3 cut(s)	204, 326, 406
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	13
BstMAI	GTCTC	3 cut(s)	63, 215, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstSLI	GKGCMC	2 cut(s)	91, 395
BsuRI	GGCC	3 cut(s)	5, 65, 203
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	2 cut(s)	104, 350
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	204, 326, 406
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	293
EcoT14I	CCWWGG	3 cut(s)	204, 326, 406
ErhI	CCWWGG	3 cut(s)	204, 326, 406
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	107, 353
FaiI	YATR	2 cut(s)	105, 351
FatI	CATG	2 cut(s)	103, 349
FspBI	CTAG	2 cut(s)	144, 312
HaeIII	GGCC	3 cut(s)	5, 65, 203
HapII	CCGG	2 cut(s)	38, 62
Hin1II	CATG	2 cut(s)	107, 353
HinfI	GANTC	3 cut(s)	284, 357, 377
HpaII	CCGG	2 cut(s)	38, 62
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	295, 416
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
Hsp92II	CATG	2 cut(s)	107, 353
LpnPI	CCDG	6 cut(s)	51, 75, 130, 134, 139, 196
MaeI	CTAG	2 cut(s)	144, 312
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	74, 244, 310, 313
MhlI	GDGCHC	3 cut(s)	91, 339, 395
MluCI	AATT	2 cut(s)	252, 419
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	8 cut(s)	16, 44, 177, 193, 211, 261, 302, 356
MseI	TTAA	2 cut(s)	14, 45
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	2 cut(s)	38, 62
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NlaIII	CATG	2 cut(s)	107, 353
PaeR7I	CTCGAG	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	284, 357
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	14, 45
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	3 cut(s)	91, 339, 395
SetI	ASST	7 cut(s)	20, 180, 241, 280, 294, 408, 427
Sfr274I	CTCGAG	1 cut(s)	293
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	13, 293, 386
SmoI	CTYRAG	3 cut(s)	13, 293, 386
Sse9I	AATT	2 cut(s)	252, 419
SspMI	CTAG	2 cut(s)	144, 312
StyI	CCWWGG	3 cut(s)	204, 326, 406
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	294, 339, 415
TasI	AATT	2 cut(s)	252, 419
TfiI	GAWTC	2 cut(s)	284, 357
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TscAI	CASTG	2 cut(s)	133, 367
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	2 cut(s)	144, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.