Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003505.1

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

123967 .. 124925

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003505.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgctcgcacagtcccccaacacaacagtcaaattcatggcctcactcttaagctcaacccaaccacttccacaggcgtttaacaaaggaccgtctccggccaccaaaccagcaactcttcgggcacagacaaatccccatgctcaacccactagtaataccagtgcagataacaacgctagactggcagtaacacagagaaaagcagtagagcttcagaggctgaaagataaggaggccaaggacagaaaggaggagaccaacaagaagatggcttctaggaaagcaatttctgtcgttttgcggagagaagctaccgaatcccacatcgagacgaagaaaggctccaggagactgcttcagaggattgtgctcaaagccctccatgaaagaatcattgctctgcagtggaagtcttctctcaaggtcactcctttttaccttggttttattctgacttggttttcgagaattgggaatgtatataatggtgttaatcctggtgtttacaataagctaatagtcatgctaggaaaatgtaaacaacccgaaaaggctgaggagctttttcaagctatgattgacgaaggctgtggtgtcagccatgaaccttatactgctcttatatctgcctatggtaggagcagtctctttgacaaagcatttgccctccttgagcagatgaagaatactcctaattgccagcctgacgtccatacttattctatcctcataaaatcttgcctgcaggtttttgcatatgacagtgcaggctctgctttcatatatggaaattcagcacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

268

Amino Acids

29.82

Weight (kDa)

9.77

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	739
AciI	CCGC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	32, 793
AcuI	CTGAAG	2 cut(s)	200, 344
AcyI	GRCGYC	1 cut(s)	711
AfiI	CCNNNNNNNGG	1 cut(s)	639
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	572
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	347, 499
AluBI	AGCT	6 cut(s)	54, 214, 314, 517, 565, 575
AluI	AGCT	6 cut(s)	54, 214, 314, 517, 565, 575
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	5 cut(s)	99, 251, 326, 346, 653
AlwNI	CAGNNNCTG	2 cut(s)	223, 776
AoxI	GGCC	3 cut(s)	39, 99, 237
ApoI	RAATTY	2 cut(s)	32, 793
ArsI	GACNNNNNNTTYG	4 cut(s)	448, 480, 647, 679
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	558
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	349, 501
BcoDI	GTCTC	5 cut(s)	99, 251, 326, 346, 653
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	4 cut(s)	153, 180, 279, 530
BfmI	CTRYAG	2 cut(s)	404, 746
BfrI	CTTAAG	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	739
Bme1390I	CCNGG	2 cut(s)	349, 501
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	349, 501
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	407, 695
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	240, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	2 cut(s)	162, 189
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	349, 501
BseDI	CCNNGG	2 cut(s)	240, 442
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	2 cut(s)	162, 189
BseRI	GAGGAG	2 cut(s)	269, 575
BseSI	GKGCMC	1 cut(s)	127
BsgI	GTGCAG	2 cut(s)	186, 789
BshFI	GGCC	3 cut(s)	41, 101, 239
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	5 cut(s)	99, 251, 326, 346, 653
BsmBI	CGTCTC	2 cut(s)	99, 326
BsnI	GGCC	3 cut(s)	41, 101, 239
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	127, 375
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	3 cut(s)	41, 101, 239
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	2 cut(s)	408, 750
BspMI	ACCTGC	1 cut(s)	739
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	162, 189
BssECI	CCNNGG	2 cut(s)	240, 442
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	2 cut(s)	240, 442
Bst2UI	CCWGG	2 cut(s)	349, 501
Bst4CI	ACNGT	4 cut(s)	12, 28, 93, 767
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	4 cut(s)	6, 704, 746, 772
BstDEI	CTNAG	1 cut(s)	558
BstENI	CCTNNNNNAGG	1 cut(s)	637
BstMAI	GTCTC	5 cut(s)	99, 251, 326, 346, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 220, 776
BstNI	CCWGG	2 cut(s)	349, 501
BstSCI	CCNGG	2 cut(s)	347, 499
BstSFI	CTRYAG	2 cut(s)	404, 746
BstSLI	GKGCMC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	41, 101, 239
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	3 cut(s)	169, 413, 772
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	4 cut(s)	6, 704, 746, 772
CaiI	CAGNNNCTG	2 cut(s)	223, 776
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	5 cut(s)	37, 140, 386, 526, 605
DdeI	CTNAG	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	240, 442
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	200, 344
EcoNI	CCTNNNNNAGG	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	347, 499
EcoT14I	CCWWGG	2 cut(s)	240, 442
ErhI	CCWWGG	2 cut(s)	240, 442
Esp3I	CGTCTC	2 cut(s)	99, 326
FaeI	CATG	5 cut(s)	40, 143, 389, 529, 608
FatI	CATG	5 cut(s)	36, 139, 385, 525, 604
FauNDI	CATATG	1 cut(s)	760
FspBI	CTAG	4 cut(s)	153, 180, 279, 530
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	3 cut(s)	41, 101, 239
HapII	CCGG	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	40, 143, 389, 529, 608
HinfI	GANTC	2 cut(s)	320, 393
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	508, 542
Hpy188I	TCNGA	3 cut(s)	219, 363, 456
Hpy188III	TCNNGA	2 cut(s)	331, 468
Hpy8I	GTNNAC	2 cut(s)	508, 542
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	4 cut(s)	12, 28, 93, 767
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	167, 406, 748, 758, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 220, 776
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	5 cut(s)	40, 143, 389, 529, 608
LmnI	GCTCC	3 cut(s)	350, 562, 642
MaeI	CTAG	4 cut(s)	153, 180, 279, 530
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	190, 427
MboII	GAAGA	5 cut(s)	110, 280, 349, 408, 697
MhlI	GDGCHC	2 cut(s)	127, 375
MluCI	AATT	5 cut(s)	32, 288, 471, 697, 793
MnlI	CCTC	9 cut(s)	52, 213, 229, 247, 357, 392, 553, 680, 740
MseI	TTAA	3 cut(s)	50, 81, 495
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	349, 501
MvaI	CCWGG	2 cut(s)	349, 501
MwoI	GCNNNNNNNGC	3 cut(s)	185, 220, 776
NdeI	CATATG	1 cut(s)	760
NlaIII	CATG	5 cut(s)	40, 143, 389, 529, 608
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	320, 393
PfoI	TCCNGGA	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	347, 499
PspGI	CCWGG	2 cut(s)	347, 499
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	2 cut(s)	408, 750
PstNI	CAGNNNCTG	2 cut(s)	223, 776
SaqAI	TTAA	3 cut(s)	50, 81, 495
Sau96I	GGNCC	1 cut(s)	89
SbfI	CCTGCAGG	1 cut(s)	750
ScrFI	CCNGG	2 cut(s)	349, 501
SdaI	CCTGCAGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	127, 375
SfcI	CTRYAG	2 cut(s)	404, 746
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	49, 422, 674
SmoI	CTYRAG	3 cut(s)	49, 422, 674
SpeI	ACTAGT	1 cut(s)	152
Sse8387I	CCTGCAGG	1 cut(s)	750
Sse9I	AATT	5 cut(s)	32, 288, 471, 697, 793
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	4 cut(s)	153, 180, 279, 530
StyD4I	CCNGG	2 cut(s)	347, 499
StyI	CCWWGG	2 cut(s)	240, 442
TaaI	ACNGT	4 cut(s)	12, 28, 93, 767
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	330, 467
TasI	AATT	5 cut(s)	32, 288, 471, 697, 793
TfiI	GAWTC	2 cut(s)	320, 393
Tru1I	TTAA	3 cut(s)	50, 81, 495
Tru9I	TTAA	3 cut(s)	50, 81, 495
TscAI	CASTG	3 cut(s)	169, 413, 772
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	25, 402, 621, 698, 772
TspRI	CASTG	3 cut(s)	169, 413, 772
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	637
XapI	RAATTY	2 cut(s)	32, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	4 cut(s)	153, 180, 279, 530
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.