Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001526

Physical Location & Seq

Genomic Coordinates Forward (+)

27236800 .. 27240444

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCTCACTCTTAAGCTCAACCCAACCACTTCCACCGGCGTTTAACCGAGGACTGTCTCCGGCCACCAAACCAGCAACTCTTCGGGCACAGACGAAGCCCCACGCTCAACCCACTAGTAATACCAGTGCAGATAACAACGCTAGACTGGCAGTAACACAGAGAAAAGCAGTAGAGCTTCAGAGGCTGAAACATAAGGAGGCCAAGGACAGAAAGGAGGAGATCAACAAGAAGATAGCTTCTCGGAAAGCAATTTCGGTCTTTTTGAGGAGAGAAGCTACCGAATCCCACATTGAGAAGAAGAAAGGCTCCAGGAGACTGCTTCCGAGGATTGTGCTCGAAGCCCTCCATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGAAGTTGCGTGAAAGCCAAGATTGGGAAGCTACTGTTAACTATTGTCAGCATACTCTTATTATTTGCACTCTCAGTTTTGACACCTCCACATTTGTGTCATTTGAAGAACTATGTATTGGCGGAGCTATCATTGGCAGGTTTCCTGTTTCGATGATGAAGCAAAGGCATAAGATCGAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGAAAGTTGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

208

Amino Acids

23.58

Weight (kDa)

10.12

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001526)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48730
fragaria_vesca	FvH4_5g33190
malus_domestica	MD10G1163400.v1.1
prunus_persica	Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1 Prupe.8G201700_v2.0.a1
pyrus_communis	pycom10g14080
rosa_chinensis	RchiOBHm_Chr1g0373361 RchiOBHm_Chr7g0231531
rosa_laevigata	RLG00000001413 RLG00000008268
rosa_multiflora	Rmu_sc0001565.1_g000030 Rmu_sc0003505.1_g000027 Rmu_sc0005399.1_g000019 Rmu_sc0011314.1_g000012 Rmu_sc0012399.1_g000004 Rmu_sc0013558.1_g000012 Rmu_sc0028716.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016380 Rroxscaffold_1G00029710 Rroxscaffold_3G00229090
rosa_rugosa	Rorug07G0267100 Rorug07G0267100
rosa_samantha	Rh1AG365000 Rh1CG099500 Rh2AG510800 Rh2BG430100 Rh2BG476000 Rh2CG061700 Rh2CG496000 Rh2DG388600 Rh2DG440000 Rh2DG484700 Rh4BG006500 Rh4DG135300 Rh5AG195600 Rh5AG195700 Rh5CG115300 Rh6AG146300 Rh7AG421500 Rh7BG396200 Rh7CG441800 Rh7DG259000 Rh7DG414200
rosa_wichuraiana	Rw0G012110 Rw6G012720 Rw6G032340 Rw6G045030 Rw7G034780 Rw7G034910 Rw7G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	516
AciI	CCGC	2 cut(s)	370, 510
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	494
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	4 cut(s)	489, 521, 564, 596
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	6 cut(s)	18, 178, 239, 278, 419, 515
AluI	AGCT	6 cut(s)	18, 178, 239, 278, 419, 515
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	63, 310
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	3, 63, 201
AspS9I	GGNCC	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	1 cut(s)	591
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	63, 310
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 144
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	49, 204, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	126, 153
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	49, 204, 326
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	2 cut(s)	126, 153
BseRI	GAGGAG	2 cut(s)	233, 283
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	5, 65, 203
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	38, 62
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	63, 310
BsnI	GGCC	3 cut(s)	5, 65, 203
Bsp1286I	GDGCHC	2 cut(s)	91, 339
Bsp143I	GATC	2 cut(s)	222, 561
BspACI	CCGC	2 cut(s)	370, 510
BspANI	GGCC	3 cut(s)	5, 65, 203
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	126, 153
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	49, 204, 326
BssMI	GATC	2 cut(s)	222, 561
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	57, 424
Bst6I	CTCTTC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	602
BstKTI	GATC	2 cut(s)	225, 564
BstMAI	GTCTC	2 cut(s)	63, 310
BstMBI	GATC	2 cut(s)	222, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 184
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	5, 65, 203
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	133, 360
BveI	ACCTGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	600
CviAII	CATG	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	2 cut(s)	224, 563
DpnII	GATC	2 cut(s)	222, 561
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	353
FaiI	YATR	5 cut(s)	195, 351, 441, 502, 558
FatI	CATG	1 cut(s)	349
FokI	GGATG	1 cut(s)	609
FspBI	CTAG	2 cut(s)	117, 144
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	5, 65, 203
HapII	CCGG	2 cut(s)	38, 62
Hin1II	CATG	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	284, 357, 377
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	38, 62
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	183, 246, 327
Hpy188III	TCNNGA	2 cut(s)	388, 565
Hpy8I	GTNNAC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	57, 424
HpyCH4V	TGCA	3 cut(s)	131, 456, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 184
HpyF3I	CTNAG	1 cut(s)	461
Hsp92II	CATG	1 cut(s)	353
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	222, 561
LmnI	GCTCC	2 cut(s)	314, 512
LpnPI	CCDG	9 cut(s)	51, 75, 87, 134, 139, 298, 325, 511, 546
MaeI	CTAG	2 cut(s)	117, 144
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	224, 563
MboI	GATC	2 cut(s)	222, 561
MboII	GAAGA	6 cut(s)	74, 244, 310, 313, 506, 599
MhlI	GDGCHC	2 cut(s)	91, 339
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	574
MseI	TTAA	3 cut(s)	14, 45, 426
MslI	CAYNNNNRTG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	2 cut(s)	38, 62
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	149, 184
NdeII	GATC	2 cut(s)	222, 561
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	284, 357
PfoI	TCCNGGA	1 cut(s)	311
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	14, 45, 426
Sau3AI	GATC	2 cut(s)	222, 561
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	91, 339
SetI	ASST	8 cut(s)	20, 180, 241, 280, 421, 476, 517, 530
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	13, 386
SmoI	CTYRAG	2 cut(s)	13, 386
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	370, 510
SspMI	CTAG	2 cut(s)	117, 144
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	57, 424
TaqI	TCGA	3 cut(s)	339, 539, 564
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	284, 357
Tru1I	TTAA	3 cut(s)	14, 45, 426
Tru9I	TTAA	3 cut(s)	14, 45, 426
TscAI	CASTG	2 cut(s)	133, 367
TspDTI	ATGAA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	133, 367
Vha464I	CTTAAG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	600
XspI	CTAG	2 cut(s)	117, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.