Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001829

Physical Location & Seq

Genomic Coordinates Reverse (-)

23011286 .. 23012125

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTTCCTCCCTATCCCTCCTCTCCCCCCACAATGCCTCCACCGCCACCCACCTTATCCTGCGCACCCCCAAATCCCCTAACATGCGCTCTTCCTACCGACCCATGTCCGTCAAAGCGCGCACAGTCCCCGCGCTCACTCAAGATGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTCGAGTACGTCAAATCCGGAATGGTCCTCGGCCTCGGCACCGGCTCTACTGCCGCCTTCGTGGTCTCCAAGCTCGGTGAGCTCCTCAAATCCGGCGATTTGAAGGACATTATTGGAGTCCCGACTTCCAAGCGCACGGAGGACCAAGCTCGCCAGTTGGGTATTCCCCTTTCGGTGCTCGACGATCACCCGAAGATCGATTTGGCGATCGACGGCGCGGATGAGGTCGACCCAAATCTTGATTTGGTCAAAGGGCGCGGCGGAGCTCTTCTGAGGGAGAAGATGGTGGAGGCGGCGTCGGAGAAGTTTGTGGTAGTGGCGGACGAGACGAAGCTGGTGACGGGGCTCGGCGGAAGCGGGCTGGCAATGCCGGTGGAGGTGGTGCAGTTCTGCTGGAAATACAACTTGGTGAGGCTTCAGGAGCTGTTTAAGGAAGAAGGGGTGGAGGCGAAATTGAGGGTCGACGGCGACGGGAAGCCGTATGTGACTGATAACTTCAACTACATTGTGGATTTGTACTTCCAGACTCCGATCAAAGACGGACCGGCGGCAGGGAAGGAGATTTTGAAATTCGAAGGTGTTGTGGAACATGGGTTGTTCTTGGACATGGCGACGGCGGTGATCATTGCCGGCACGGATGGAGTGGATGTGAAGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

280

Amino Acids

29.95

Weight (kDa)

5.68

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	98 - 273	1.1e-60	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04790
fragaria_vesca	FvH4_6g03160
malus_domestica	MD04G1222500.v1.1 MD12G1238600.v1.1
prunus_persica	Prupe.6G341500_v2.0.a1
pyrus_communis	pycom04g19680 pycom12g21930
rosa_chinensis	RchiOBHm_Chr3g0451421
rosa_laevigata	RLG00000007161 RLG00000007952 RLG00000016309 RLG00000017186 RLG00000025661 RLG00000034591 RLG00000035184 RLG00000035331
rosa_multiflora	Rmu_sc0000212.1_g000012 Rmu_sc0000578.1_g000020 Rmu_sc0002575.1_g000002 Rmu_sc0003216.1_g000009 Rmu_sc0004058.1_g000023 Rmu_sc0021369.1_g000003 Rmu_ssc0000421.1_g000073
rosa_roxburghii	Rroxscaffold_164G00436510 Rroxscaffold_1G00008300 Rroxscaffold_1G00041190 Rroxscaffold_2G00115660 Rroxscaffold_2G00144830 Rroxscaffold_4G00295890 Rroxscaffold_6G00428830
rosa_rugosa	Rorug02G0633700.1 Rorug05G0038600 Rorug06G0042600
rosa_samantha	Rh3AG036700 Rh3BG037300 Rh3CG035900 Rh3DG036800 Rh3DG372600 Rh4CG172100 Rh4CG229700 Rh5CG197600 Rh5DG501000 Rh5DG501100 Rh5DG501200 Rh6AG133400
rosa_wichuraiana	Rw3G002710 Rw4G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
Acc16I	TGCGCA	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	405, 639
AccII	CGCG	4 cut(s)	121, 134, 395, 435
AccIII	TCCGGA	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	2 cut(s)	185, 695
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	280, 676, 745
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 566, 598
AluBI	AGCT	7 cut(s)	160, 250, 259, 326, 443, 511, 601
AluI	AGCT	7 cut(s)	160, 250, 259, 326, 443, 511, 601
Alw21I	GWGCWC	3 cut(s)	261, 357, 445
Alw26I	GTCTC	2 cut(s)	247, 497
AlwNI	CAGNNNCTG	1 cut(s)	601
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	2 cut(s)	174, 208
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	8 cut(s)	66, 90, 121, 123, 136, 312, 395, 435
AspS9I	GGNCC	3 cut(s)	202, 319, 719
AsuHPI	GGTGA	5 cut(s)	266, 356, 526, 598, 808
AsuII	TTCGAA	1 cut(s)	750
AvaII	GGWCC	3 cut(s)	202, 319, 719
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	261, 445, 525
Bbv12I	GWGCWC	3 cut(s)	261, 357, 445
BccI	CCATC	2 cut(s)	454, 809
BceAI	ACGGC	5 cut(s)	161, 406, 640, 658, 807
BclI	TGATCA	1 cut(s)	798
BcoDI	GTCTC	2 cut(s)	247, 497
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	5 cut(s)	165, 231, 436, 471, 726
BlsI	GCNGC	5 cut(s)	166, 232, 437, 472, 727
Bme18I	GGWCC	3 cut(s)	202, 319, 719
BmgT120I	GGNCC	3 cut(s)	202, 319, 719
BmiI	GGNNCC	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	126, 137
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	205, 211
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 458, 488, 810, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse118I	RCCGGY	4 cut(s)	218, 547, 721, 806
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	2 cut(s)	549, 801
BseAI	TCCGGA	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	205, 211
BseGI	GGATG	3 cut(s)	403, 820, 829
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	2 cut(s)	549, 801
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	331
BsePI	GCGCGC	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	11, 251
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	4 cut(s)	121, 134, 395, 435
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	176, 210
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	3 cut(s)	261, 357, 445
BsiSI	CCGG	6 cut(s)	195, 219, 270, 548, 722, 807
BslFI	GGGAC	2 cut(s)	113, 281
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	2 cut(s)	247, 497
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	113, 281
BsnI	GGCC	2 cut(s)	176, 210
Bso31I	GGTCTC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	4 cut(s)	261, 357, 445, 525
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	361, 372, 384, 708, 798
BspANI	GGCC	2 cut(s)	176, 210
BspCNI	CTCAG	1 cut(s)	441
BspDI	ATCGAT	1 cut(s)	375
BspEI	TCCGGA	1 cut(s)	194
BspFNI	CGCG	4 cut(s)	121, 134, 395, 435
BspLI	GGNNCC	1 cut(s)	217
BspQI	GCTCTTC	3 cut(s)	97, 450, 824
BspT104I	TTCGAA	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	549, 801
BsrFI	RCCGGY	4 cut(s)	218, 547, 721, 806
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	4 cut(s)	218, 547, 721, 806
BssECI	CCNNGG	2 cut(s)	205, 211
BssHII	GCGCGC	1 cut(s)	119
BssMI	GATC	5 cut(s)	361, 372, 384, 708, 798
BssNI	GRCGYC	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	3 cut(s)	97, 450, 824
BstACI	GRCGYC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	6 cut(s)	121, 162, 328, 536, 540, 808
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	403, 820, 829
BstFNI	CGCG	4 cut(s)	121, 134, 395, 435
BstHHI	GCGC	8 cut(s)	66, 90, 121, 123, 136, 312, 395, 435
BstKTI	GATC	5 cut(s)	364, 375, 387, 711, 801
BstMAI	GTCTC	2 cut(s)	247, 497
BstMBI	GATC	5 cut(s)	361, 372, 384, 708, 798
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 173, 256, 544, 598
BstNSI	RCATGY	1 cut(s)	88
BstPAI	GACNNNNGTC	1 cut(s)	106
BstUI	CGCG	4 cut(s)	121, 134, 395, 435
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	176, 210
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	403, 820, 829
Cac8I	GCNNGC	6 cut(s)	121, 162, 328, 536, 540, 808
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	8 cut(s)	66, 90, 121, 123, 136, 312, 395, 435
Cfr10I	RCCGGY	4 cut(s)	218, 547, 721, 806
Cfr13I	GGNCC	3 cut(s)	202, 319, 719
ClaI	ATCGAT	1 cut(s)	375
CpoI	CGGWCCG	1 cut(s)	719
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	184, 694
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CspI	CGGWCCG	1 cut(s)	719
CviAII	CATG	4 cut(s)	85, 106, 767, 784
CviQI	GTAC	2 cut(s)	184, 694
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	5 cut(s)	363, 374, 386, 710, 800
DpnII	GATC	5 cut(s)	361, 372, 384, 708, 798
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	3 cut(s)	97, 450, 824
EarI	CTCTTC	3 cut(s)	97, 450, 824
EciI	GGCGGA	3 cut(s)	453, 512, 543
Ecl136II	GAGCTC	2 cut(s)	259, 443
Eco24I	GRGCYC	3 cut(s)	261, 445, 525
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	3 cut(s)	202, 319, 719
Eco53kI	GAGCTC	2 cut(s)	259, 443
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	259, 443
EcoT38I	GRGCYC	3 cut(s)	261, 445, 525
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	4 cut(s)	88, 109, 770, 787
FaiI	YATR	5 cut(s)	86, 107, 660, 768, 785
FaqI	GGGAC	2 cut(s)	113, 281
FatI	CATG	4 cut(s)	84, 105, 766, 783
FauI	CCCGC	2 cut(s)	139, 527
FbaI	TGATCA	1 cut(s)	798
FblI	GTMKAC	2 cut(s)	405, 639
Fnu4HI	GCNGC	5 cut(s)	165, 231, 436, 471, 726
FokI	GGATG	3 cut(s)	410, 827, 836
FriOI	GRGCYC	3 cut(s)	261, 445, 525
Fsp4HI	GCNGC	5 cut(s)	165, 231, 436, 471, 726
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	8 cut(s)	65, 89, 120, 122, 135, 311, 394, 434
GluI	GCNGC	5 cut(s)	165, 231, 436, 471, 726
HaeIII	GGCC	2 cut(s)	176, 210
HapII	CCGG	6 cut(s)	195, 219, 270, 548, 722, 807
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	8 cut(s)	66, 90, 121, 123, 136, 312, 395, 435
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	4 cut(s)	88, 109, 770, 787
Hin6I	GCGC	8 cut(s)	64, 88, 119, 121, 134, 310, 393, 433
HinP1I	GCGC	8 cut(s)	64, 88, 119, 121, 134, 310, 393, 433
HincII	GTYRAC	2 cut(s)	406, 640
HindII	GTYRAC	2 cut(s)	406, 640
HinfI	GANTC	2 cut(s)	294, 703
HpaII	CCGG	6 cut(s)	195, 219, 270, 548, 722, 807
HphI	GGTGA	5 cut(s)	266, 356, 526, 598, 808
Hpy166II	GTNNAC	2 cut(s)	406, 640
Hpy188I	TCNGA	3 cut(s)	450, 478, 708
Hpy188III	TCNNGA	7 cut(s)	143, 154, 195, 298, 416, 596, 700
Hpy8I	GTNNAC	2 cut(s)	406, 640
Hpy99I	CGWCG	7 cut(s)	182, 362, 392, 478, 644, 650, 793
HpyAV	CCTTC	5 cut(s)	244, 274, 608, 727, 746
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 173, 256, 544, 598
HpyF3I	CTNAG	1 cut(s)	449
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	88, 109, 770, 787
HspAI	GCGC	8 cut(s)	64, 88, 119, 121, 134, 310, 393, 433
Kpn2I	TCCGGA	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	806
KroNI	GCCGGC	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	5 cut(s)	361, 372, 384, 708, 798
LguI	GCTCTTC	3 cut(s)	97, 450, 824
LmnI	GCTCC	3 cut(s)	264, 440, 598
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	514, 661
MalI	GATC	5 cut(s)	363, 374, 386, 710, 800
MboI	GATC	5 cut(s)	361, 372, 384, 708, 798
MboII	GAAGA	5 cut(s)	84, 382, 437, 469, 623
MhlI	GDGCHC	4 cut(s)	261, 357, 445, 525
MluCI	AATT	2 cut(s)	629, 746
MlyI	GAGTC	2 cut(s)	303, 697
MmeI	TCCRAC	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	806
MseI	TTAA	1 cut(s)	606
MspI	CCGG	6 cut(s)	195, 219, 270, 548, 722, 807
MvnI	CGCG	4 cut(s)	121, 134, 395, 435
MwoI	GCNNNNNNNGC	5 cut(s)	44, 173, 256, 544, 598
NaeI	GCCGGC	1 cut(s)	808
NdeII	GATC	5 cut(s)	361, 372, 384, 708, 798
NgoMIV	GCCGGC	1 cut(s)	806
NlaIII	CATG	4 cut(s)	88, 109, 770, 787
NlaIV	GGNNCC	1 cut(s)	217
NmeAIII	GCCGAG	3 cut(s)	186, 192, 504
NmuCI	GTSAC	2 cut(s)	514, 661
NsbI	TGCGCA	1 cut(s)	65
NspI	RCATGY	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	750
PauI	GCGCGC	1 cut(s)	119
PciSI	GCTCTTC	3 cut(s)	97, 450, 824
PdiI	GCCGGC	1 cut(s)	808
PkrI	GCNGC	5 cut(s)	166, 232, 437, 472, 727
Ple19I	CGATCG	1 cut(s)	387
PleI	GAGTC	2 cut(s)	302, 697
PpsI	GAGTC	2 cut(s)	302, 697
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	2 cut(s)	261, 445
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	202, 319, 719
PstNI	CAGNNNCTG	1 cut(s)	601
PteI	GCGCGC	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	387
RsaI	GTAC	2 cut(s)	185, 695
RsaNI	GTAC	2 cut(s)	184, 694
Rsr2I	CGGWCCG	1 cut(s)	719
RsrII	CGGWCCG	1 cut(s)	719
SacI	GAGCTC	2 cut(s)	261, 445
SalI	GTCGAC	2 cut(s)	404, 638
SapI	GCTCTTC	3 cut(s)	97, 450, 824
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	5 cut(s)	165, 231, 436, 471, 726
Sau3AI	GATC	5 cut(s)	361, 372, 384, 708, 798
Sau96I	GGNCC	3 cut(s)	202, 319, 719
SchI	GAGTC	2 cut(s)	303, 697
SduI	GDGCHC	4 cut(s)	261, 357, 445, 525
SfuI	TTCGAA	1 cut(s)	750
SinI	GGWCC	3 cut(s)	202, 319, 719
SmlI	CTYRAG	2 cut(s)	141, 152
SmoI	CTYRAG	2 cut(s)	141, 152
Sse9I	AATT	2 cut(s)	629, 746
SstI	GAGCTC	2 cut(s)	261, 445
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	7 cut(s)	180, 357, 375, 387, 405, 639, 750
TasI	AATT	2 cut(s)	629, 746
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	5 cut(s)	167, 233, 438, 473, 728
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	514, 661
Tsp45I	GTSAC	2 cut(s)	514, 661
TspGWI	ACGGA	4 cut(s)	100, 329, 732, 827
VpaK11BI	GGWCC	3 cut(s)	202, 319, 719
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	1 cut(s)	88
XmiI	GTMKAC	2 cut(s)	405, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.