pycom16g09800

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000651
Physical Location & Seq
Reverse (-)
6691151 .. 6692038
888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGATCAAGGCATACGTGGAGACGGAAGATGTTTGTTCCGGTCTGTGGTTCACGGCGCTTCTCTAAGGGCAGGGAAACCATCTCCAAGTGACAGCCTTCAGAGAGAACTTGCCGACGAGCTCAGATCAAAGGTACACGATGAACTCAAATTTACTGAATTCAGAAGGATACTGATGTTTCTTGAAGATGATTTTGAAACGTACGTTGTACAGATGCGACAGCCCCACATTTGGGGAGGAGAACCTGAGTTGCTTATGTCCTCACATGTCCTACGGATGCCGATTACAGTTTATATGCGGGACAAGGATTCCGGCGACCTCAAGATCATAGCCGAATATGGTCAAGAGTACGGTAAGGACAACCCTATCCGCGTACTTTATCATGGTTATGGACACTACGACACACTGCCTGCTGCAACTACTGGTACACAGTCCAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

148

Amino Acids

16.83

Weight (kDa)

6.05

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 6 - 133 1e-24 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 372
AciI CCGC 2 cut(s) 298, 370
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 149, 158
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 6 cut(s) 135, 203, 210, 350, 375, 427
AfiI CCNNNNNNNGG 3 cut(s) 46, 231, 232
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 185, 197
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 149, 158
AspLEI GCGC 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 161, 194
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
BmsI GCATC 2 cut(s) 204, 267
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 231, 232
Bse1I ACTGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 46, 231, 232
BseMII CTCAG 2 cut(s) 136, 237
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 40, 312
BsiWI CGTACG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 46, 231, 232
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 4, 125, 324
BspACI CCGC 2 cut(s) 298, 370
BspCNI CTCAG 2 cut(s) 135, 238
BspFNI CGCG 1 cut(s) 372
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 208
BsrI ACTGG 1 cut(s) 427
BssMI GATC 3 cut(s) 4, 125, 324
Bst4CI ACNGT 3 cut(s) 289, 353, 432
BstAUI TGTACA 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 65, 122, 246
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 7, 128, 327
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 4, 125, 324
BstNSI RCATGY 1 cut(s) 269
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 400
BsuI GTATCC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 134, 202, 209, 349, 374, 426
CviAII CATG 2 cut(s) 266, 383
CviJI RGCY 4 cut(s) 96, 121, 223, 332
CviKI_1 RGCY 4 cut(s) 96, 121, 223, 332
CviQI GTAC 6 cut(s) 134, 202, 209, 349, 374, 426
DdeI CTNAG 3 cut(s) 65, 122, 246
DpnI GATC 3 cut(s) 6, 127, 326
DpnII GATC 3 cut(s) 4, 125, 324
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 269, 386
FaiI YATR 9 cut(s) 14, 257, 267, 294, 296, 329, 339, 384, 390
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 265, 382
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 414
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 60
HapII CCGG 2 cut(s) 40, 312
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 269, 386
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 308
HpaII CCGG 2 cut(s) 40, 312
Hpy166II GTNNAC 3 cut(s) 52, 136, 428
Hpy188I TCNGA 3 cut(s) 102, 125, 164
Hpy188III TCNNGA 3 cut(s) 182, 322, 344
Hpy8I GTNNAC 3 cut(s) 52, 136, 428
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 107, 159
HpyCH4III ACNGT 3 cut(s) 289, 353, 432
HpyCH4IV ACGT 3 cut(s) 16, 200, 204
HpyCH4V TGCA 1 cut(s) 416
HpyF3I CTNAG 3 cut(s) 65, 122, 246
HpySE526I ACGT 3 cut(s) 16, 200, 204
Hsp92II CATG 2 cut(s) 269, 386
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 4, 125, 324
LpnPI CCDG 6 cut(s) 53, 57, 258, 325, 408, 423
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 2 cut(s) 204, 267
MaeII ACGT 3 cut(s) 16, 200, 204
MaeIII GTNAC 1 cut(s) 89
MalI GATC 3 cut(s) 6, 127, 326
MboI GATC 3 cut(s) 4, 125, 324
MboII GAAGA 2 cut(s) 39, 197
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 2 cut(s) 149, 158
MnlI CCTC 3 cut(s) 230, 271, 329
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 2 cut(s) 40, 312
MvnI CGCG 1 cut(s) 372
NdeII GATC 3 cut(s) 4, 125, 324
NlaIII CATG 2 cut(s) 269, 386
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 269
PciI ACATGT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 308
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 123
PspLI CGTACG 1 cut(s) 201
RsaI GTAC 6 cut(s) 135, 203, 210, 350, 375, 427
RsaNI GTAC 6 cut(s) 134, 202, 209, 349, 374, 426
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 123
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 3 cut(s) 4, 125, 324
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 19, 123, 135, 203, 207, 247, 321
SfaNI GCATC 2 cut(s) 204, 267
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 149, 158
SsiI CCGC 2 cut(s) 298, 370
SstI GAGCTC 1 cut(s) 123
TaaI ACNGT 3 cut(s) 289, 353, 432
TaiI ACGT 3 cut(s) 19, 203, 207
TasI AATT 2 cut(s) 149, 158
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 308
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 39, 289
TspRI CASTG 1 cut(s) 411
XapI RAATTY 2 cut(s) 149, 158
XceI RCATGY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.