pycom17g06820

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
4933473 .. 4936224
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1392 bp
ATGACAATTGGAAGTCTTGCTCCAAAGAAGGAGAAGAAGTCAAGAAAGCACAAAGGAGTGATTGATGAGAATGCTCCTTTGTTGCCCAAAGGGCAAGTGGAAGATGCAGGGTTTGATGAGTTCAATGGAGCTTCCTTTACTGGGGCAGTGTTTAATTTGTCCACCACCATTGTTGGTGCTGGGATCATGGCTTTGCCTGCTACCATGAAAGTGTTGGGCCTTGTCCTTGGGATCTCCATGATAATTTTCATGGCGTTCTTGACCGAGGCTTCGATCGAATTGATACTTAGGTTCAGCAGGGCAGGGAAGTCTGCTTCTTATGGAGGTCTCATGGGAGATGCCTTTGGAAAATATGGAAAGATTTTGTTGCAGGTGTCGGTTTTAGTCAACAACCTCGGTGTGCTCATTGTCTACATGATTATCATTGGTGATGTGCTTTCTGGGACATCTTCGAGTGGAAGTGGGGTTCACCATGCCGGTGTACTTGAAGGATGGTTTGGAGTACACTGGTGGACTGCGCGATTCATTGTTCTTCTTGTCACGACACTTGGCATATTTGCTCCATTGGCATGCTTTAAGCGAATCGATTCATTGAGCTTCACGTCTGCCCTATCAGTTGCACTAGCAGTTGTATTTCTTGTTATTACTGTTGGAATTACAGTTGTCAAGTTGATCGATCGAAGCATTGCAATGCCCAGATTGCTACCTGATGTTATTGATGTCTCATCATTCTTCAGTCTCTTCACCGTAGTCCCCGTTCTTGTCACTGCATACATTTGTCACTACAATGTCCACAGCATCCACAACGAGCTTGAAGACTCTACACAGATCAGAGGTGTTGTGCAAGCCTCGCTTGCTTTATGTTCATCTGTTTACATAATGACAAGCCTTTTTGGGTTCCTCCTATTTGGGGACGGAACTCTTGACGATGTGCTTGCCAACTTTGACACAAACCTTGGCATTCCTTACAGTTCCGTGCTCAACGATGCGGTGCGTGTCAGCTATGCTGCTCACCTTATGCTTGTATTTCCCATTGTCTTCTTTCCATTGCGGCTCAACTTGGACGGCCTCCTCTTTCCCTCTGCAAGGCCAATGGTTCTGGATAACATGAGATTTGCACTAGTCACCATTGGCCTCATAAGTATTATCTTCTTGGGTGCAAACTTCATACCCAGCATCTGGGATGCTTTCCAGTTCACTGGAGCAACTGCTGCCGTTTGCCTCGGGTTCATTTTCCCTGCTGCAATTACTCTCAAGGATCGACACAACATAGCAACCAAGAAGGACAAGATCTTGAGCGTTTTCATGATTGTCCTTGCTGTGTTCTCAAACGCCGTGGCCATATACAGTGATGCGTATGCCTTGTTCAAGAACACATCAAAACGCGAATGA

Protein Analysis

464

Amino Acids

49.93

Weight (kDa)

8.25

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 44 - 450 3.3e-54 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 45 - 276 2.2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 1179
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 520, 1386
AciI CCGC 2 cut(s) 989, 1051
AclWI GGATC 3 cut(s) 191, 239, 1266
AcoI YGGCCR 1 cut(s) 1338
AcuI CTGAAG 1 cut(s) 718
AfaI GTAC 2 cut(s) 483, 504
AfiI CCNNNNNNNGG 4 cut(s) 141, 910, 1086, 1179
AgsI TTSAA 4 cut(s) 124, 488, 815, 1369
AhlI ACTAGT 1 cut(s) 1120
AjiI CACGTC 1 cut(s) 603
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 4 cut(s) 131, 597, 811, 1002
AluI AGCT 4 cut(s) 131, 597, 811, 1002
Alw21I GWGCWC 2 cut(s) 405, 981
Alw26I GTCTC 3 cut(s) 332, 727, 743
AlwI GGATC 3 cut(s) 191, 239, 1266
AlwNI CAGNNNCTG 1 cut(s) 1179
Ama87I CYCGRG 1 cut(s) 1223
AoxI GGCC 5 cut(s) 217, 1066, 1088, 1132, 1338
ApeKI GCWGC 3 cut(s) 1007, 1211, 1241
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 1 cut(s) 586
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 5 cut(s) 440, 461, 736, 1004, 1117
AvaI CYCGRG 1 cut(s) 1223
BaeI ACNNNNGTAYC 2 cut(s) 275, 308
BalI TGGCCA 1 cut(s) 1340
BbsI GAAGAC 2 cut(s) 822, 1030
Bbv12I GWGCWC 2 cut(s) 405, 981
BbvI GCAGC 3 cut(s) 994, 1198, 1228
BccI CCATC 1 cut(s) 486
BceAI ACGGC 3 cut(s) 1081, 1199, 1319
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BcoDI GTCTC 3 cut(s) 332, 727, 743
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 2 cut(s) 623, 1121
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 91
BglII AGATCT 1 cut(s) 1290
BisI GCNGC 4 cut(s) 1008, 1052, 1212, 1242
BlsI GCNGC 4 cut(s) 1009, 1053, 1213, 1243
BmeT110I CYCGRG 1 cut(s) 1223
BmgBI CACGTC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 899
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 7 cut(s) 94, 328, 807, 976, 1174, 1185, 1342
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 2 cut(s) 822, 1030
BpmI CTGGAG 1 cut(s) 1221
BpuEI CTTGAG 2 cut(s) 1238, 1315
Bsa29I ATCGAT 2 cut(s) 585, 675
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 6 cut(s) 226, 264, 394, 955, 1222, 1335
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 910, 1086, 1179
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 4 cut(s) 145, 512, 1192, 1204
Bse3DI GCAATG 3 cut(s) 684, 696, 1046
BseCI ATCGAT 2 cut(s) 585, 675
BseDI CCNNGG 6 cut(s) 226, 264, 394, 955, 1222, 1335
BseGI GGATG 3 cut(s) 497, 798, 1189
BseLI CCNNNNNNNGG 4 cut(s) 141, 910, 1086, 1179
BseMI GCAATG 3 cut(s) 684, 696, 1046
BseNI ACTGG 4 cut(s) 145, 512, 1192, 1204
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 3 cut(s) 994, 1198, 1228
BseYI CCCAGC 2 cut(s) 179, 1172
Bsh1236I CGCG 2 cut(s) 520, 1386
Bsh1285I CGRYCG 2 cut(s) 276, 679
BshFI GGCC 5 cut(s) 219, 1068, 1090, 1134, 1340
BshVI ATCGAT 2 cut(s) 585, 675
BsiEI CGRYCG 2 cut(s) 276, 679
BsiHKAI GWGCWC 2 cut(s) 405, 981
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 1 cut(s) 477
BslFI GGGAC 3 cut(s) 457, 737, 926
BslI CCNNNNNNNGG 4 cut(s) 141, 910, 1086, 1179
BsmAI GTCTC 3 cut(s) 332, 727, 743
BsmFI GGGAC 3 cut(s) 457, 737, 926
BsmI GAATGC 2 cut(s) 76, 960
BsnI GGCC 5 cut(s) 219, 1068, 1090, 1134, 1340
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 1223
Bsp1286I GDGCHC 2 cut(s) 405, 981
Bsp143I GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
BspACI CCGC 2 cut(s) 989, 1051
BspANI GGCC 5 cut(s) 219, 1068, 1090, 1134, 1340
BspDI ATCGAT 2 cut(s) 585, 675
BspFNI CGCG 2 cut(s) 520, 1386
BspHI TCATGA 1 cut(s) 1305
BspLI GGNNCC 1 cut(s) 899
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 3 cut(s) 191, 239, 1266
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 3 cut(s) 684, 696, 1046
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 4 cut(s) 145, 512, 1192, 1204
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 6 cut(s) 226, 264, 394, 955, 1222, 1335
BssMI GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
BssT1I CCWWGG 2 cut(s) 226, 955
Bst4CI ACNGT 5 cut(s) 649, 661, 748, 971, 1349
Bst6I CTCTTC 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 1211
BstC8I GCNNGC 5 cut(s) 198, 571, 846, 855, 936
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 1335
BstENI CCTNNNNNAGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 497, 798, 1189
BstFNI CGCG 2 cut(s) 520, 1386
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 8 cut(s) 186, 234, 276, 675, 679, 831, 1261, 1293
BstMAI GTCTC 3 cut(s) 332, 727, 743
BstMBI GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
BstMCI CGRYCG 2 cut(s) 276, 679
BstMWI GCNNNNNNNGC 7 cut(s) 91, 197, 566, 700, 850, 854, 1211
BstNSI RCATGY 1 cut(s) 573
BstUI CGCG 2 cut(s) 520, 1386
BstV1I GCAGC 3 cut(s) 994, 1198, 1228
BstV2I GAAGAC 2 cut(s) 822, 1030
BstX2I RGATCY 2 cut(s) 231, 1290
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstYI RGATCY 2 cut(s) 231, 1290
Bsu15I ATCGAT 2 cut(s) 585, 675
BsuRI GGCC 5 cut(s) 219, 1068, 1090, 1134, 1340
BsuTUI ATCGAT 2 cut(s) 585, 675
BtgI CCRYGG 1 cut(s) 1335
BtrI CACGTC 1 cut(s) 603
BtsCI GGATG 3 cut(s) 497, 798, 1189
BtsI GCAGTG 2 cut(s) 153, 765
BtsIMutI CAGTG 5 cut(s) 153, 505, 765, 1197, 1354
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 5 cut(s) 198, 571, 846, 855, 936
CaiI CAGNNNCTG 1 cut(s) 1179
CciI TCATGA 1 cut(s) 1305
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 217
ClaI ATCGAT 2 cut(s) 585, 675
Csp6I GTAC 2 cut(s) 482, 503
CspCI CAANNNNNGTGG 6 cut(s) 151, 154, 186, 189, 1317, 1352
CviQI GTAC 2 cut(s) 482, 503
DdeI CTNAG 1 cut(s) 287
DpnI GATC 8 cut(s) 185, 233, 275, 674, 678, 830, 1260, 1292
DpnII GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
EaeI YGGCCR 1 cut(s) 1338
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
Eco130I CCWWGG 2 cut(s) 226, 955
Eco31I GGTCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 718
Eco88I CYCGRG 1 cut(s) 1223
EcoNI CCTNNNNNAGG 1 cut(s) 1084
EcoT14I CCWWGG 2 cut(s) 226, 955
ErhI CCWWGG 2 cut(s) 226, 955
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 3 cut(s) 457, 737, 926
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 1008, 1052, 1212, 1242
FokI GGATG 3 cut(s) 504, 785, 1196
Fsp4HI GCNGC 4 cut(s) 1008, 1052, 1212, 1242
FspBI CTAG 2 cut(s) 623, 1121
GlaI GCGC 1 cut(s) 519
GluI GCNGC 4 cut(s) 1008, 1052, 1212, 1242
GsaI CCCAGC 2 cut(s) 183, 1176
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 5 cut(s) 219, 1068, 1090, 1134, 1340
HapII CCGG 1 cut(s) 477
HhaI GCGC 1 cut(s) 520
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 4 cut(s) 522, 582, 587, 818
HpaII CCGG 1 cut(s) 477
HphI GGTGA 5 cut(s) 440, 461, 736, 1004, 1117
Hpy188I TCNGA 1 cut(s) 833
Hpy188III TCNNGA 8 cut(s) 42, 259, 541, 923, 1100, 1294, 1306, 1369
HpyAV CCTTC 3 cut(s) 22, 482, 1276
HpyCH4III ACNGT 5 cut(s) 649, 661, 748, 971, 1349
HpyCH4IV ACGT 1 cut(s) 602
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 197, 566, 700, 850, 854, 1211
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 602
HspAI GCGC 1 cut(s) 518
Kzo9I GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
LmnI GCTCC 5 cut(s) 25, 79, 128, 565, 1202
Lsp1109I GCAGC 3 cut(s) 994, 1198, 1228
LweI GCATC 7 cut(s) 94, 328, 807, 976, 1174, 1185, 1342
MaeI CTAG 2 cut(s) 623, 1121
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 4 cut(s) 538, 763, 779, 1123
MalI GATC 8 cut(s) 185, 233, 275, 674, 678, 830, 1260, 1292
MboI GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
MboII GAAGA 9 cut(s) 46, 113, 441, 524, 724, 733, 827, 1030, 1141
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 231, 1290
MhlI GDGCHC 2 cut(s) 405, 981
MlsI TGGCCA 1 cut(s) 1340
MluCI AATT 6 cut(s) 6, 154, 243, 278, 654, 1245
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 1 cut(s) 631
Mox20I TGGCCA 1 cut(s) 1340
MroXI GAANNNNTTC 1 cut(s) 586
MscI TGGCCA 1 cut(s) 1340
MseI TTAA 2 cut(s) 153, 576
MslI CAYNNNNRTG 5 cut(s) 209, 477, 568, 689, 786
Msp20I TGGCCA 1 cut(s) 1340
MspI CCGG 1 cut(s) 477
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 2 cut(s) 76, 960
MvnI CGCG 2 cut(s) 520, 1386
MwoI GCNNNNNNNGC 7 cut(s) 91, 197, 566, 700, 850, 854, 1211
NdeII GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
NlaIV GGNNCC 1 cut(s) 899
NmuCI GTSAC 4 cut(s) 538, 763, 779, 1123
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PagI TCATGA 1 cut(s) 1305
PaqCI CACCTGC 1 cut(s) 361
PctI GAATGC 2 cut(s) 76, 960
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 3 cut(s) 522, 582, 587
PflMI CCANNNNNTGG 1 cut(s) 1179
PkrI GCNGC 4 cut(s) 1009, 1053, 1213, 1243
Ple19I CGATCG 2 cut(s) 276, 679
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
PspFI CCCAGC 2 cut(s) 179, 1172
PspN4I GGNNCC 1 cut(s) 899
PspPI GGNCC 1 cut(s) 217
PsrI GAACNNNNNNTAC 4 cut(s) 741, 773, 1349, 1381
PstNI CAGNNNCTG 1 cut(s) 1179
PsuI RGATCY 2 cut(s) 231, 1290
PvuI CGATCG 2 cut(s) 276, 679
RsaI GTAC 2 cut(s) 483, 504
RsaNI GTAC 2 cut(s) 482, 503
RseI CAYNNNNRTG 5 cut(s) 209, 477, 568, 689, 786
SaqAI TTAA 2 cut(s) 153, 576
SatI GCNGC 4 cut(s) 1008, 1052, 1212, 1242
Sau3AI GATC 8 cut(s) 183, 231, 273, 672, 676, 828, 1258, 1290
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 812
SduI GDGCHC 2 cut(s) 405, 981
SfaNI GCATC 7 cut(s) 94, 328, 807, 976, 1174, 1185, 1342
SmiMI CAYNNNNRTG 5 cut(s) 209, 477, 568, 689, 786
SmlI CTYRAG 2 cut(s) 1253, 1294
SmoI CTYRAG 2 cut(s) 1253, 1294
SpeI ACTAGT 1 cut(s) 1120
SphI GCATGC 1 cut(s) 573
Sse9I AATT 6 cut(s) 6, 154, 243, 278, 654, 1245
SsiI CCGC 2 cut(s) 989, 1051
SspMI CTAG 2 cut(s) 623, 1121
StyI CCWWGG 2 cut(s) 226, 955
TaaI ACNGT 5 cut(s) 649, 661, 748, 971, 1349
TaiI ACGT 1 cut(s) 605
TaqI TCGA 7 cut(s) 272, 276, 452, 585, 675, 679, 1261
TaqII GACCGA 1 cut(s) 278
TasI AATT 6 cut(s) 6, 154, 243, 278, 654, 1245
TatI WGTACW 2 cut(s) 481, 502
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 3 cut(s) 522, 582, 587
Tru1I TTAA 2 cut(s) 153, 576
Tru9I TTAA 2 cut(s) 153, 576
TscAI CASTG 5 cut(s) 153, 512, 772, 1204, 1354
TseFI GTSAC 4 cut(s) 538, 763, 779, 1123
TseI GCWGC 3 cut(s) 1007, 1211, 1241
Tsp45I GTSAC 4 cut(s) 538, 763, 779, 1123
TspDTI ATGAA 8 cut(s) 221, 238, 514, 579, 855, 1156, 1219, 1294
TspGWI ACGGA 2 cut(s) 930, 964
TspRI CASTG 5 cut(s) 153, 512, 772, 1204, 1354
Van91I CCANNNNNTGG 1 cut(s) 1179
XagI CCTNNNNNAGG 1 cut(s) 1084
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 2 cut(s) 94, 211
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 2 cut(s) 623, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.