RchiOBHm_Chr2g0115301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001442
Physical Location & Seq
Reverse (-)
27397953 .. 27399354
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGTATATTTCCTGGCAGTTCATTGATCTTCCTGATAATCCTGCTGCTGCTGTTGGATTTCAGTTAAATCTTACTGCAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAGAGATTGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAACTCAGTTTATTTCCGCGGATATACCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGCGTTTGTACTGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTATGGAGATAGATAAGCAAAATATTATGGGTCCTGTGAGCTTCCTTGCTGATCTTGGCGGCTTGTATTGCATCTCCATTGGCATATTTTTCTACCTTCTGGTGCAAGTATGCTTTGGATGTGAATGTGGAGAGGGCAAAAGATGTTCTCATGCATTAAAGGCTATTGCATATGGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.6

Weight (kDa)

6.99

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 208
AciI CCGC 3 cut(s) 206, 208, 432
AfaI GTAC 3 cut(s) 139, 267, 350
AfiI CCNNNNNNNGG 2 cut(s) 315, 326
AgsI TTSAA 2 cut(s) 190, 314
AjnI CCWGG 1 cut(s) 11
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 294, 326
AluBI AGCT 2 cut(s) 298, 414
AluI AGCT 2 cut(s) 298, 414
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 44, 47
AspS9I GGNCC 1 cut(s) 404
AvaII GGWCC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbvI GCAGC 2 cut(s) 31, 34
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 13
BfaI CTAG 1 cut(s) 125
BisI GCNGC 3 cut(s) 45, 48, 433
BlsI GCNGC 3 cut(s) 46, 49, 434
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 121, 405
BmrFI CCNGG 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 314, 453
BmuI ACTGGG 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 326
Bse1I ACTGG 2 cut(s) 155, 273
Bse21I CCTNAGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 5 cut(s) 151, 240, 305, 331, 497
BseLI CCNNNNNNNGG 2 cut(s) 315, 326
BseMII CTCAG 2 cut(s) 95, 208
BseNI ACTGG 2 cut(s) 155, 273
BseXI GCAGC 2 cut(s) 31, 34
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 315, 326
BsnI GGCC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 25, 229, 424
BspACI CCGC 3 cut(s) 206, 208, 432
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 96, 207
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 121, 405
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 155, 273
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 25, 229, 424
Bst2UI CCWGG 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 348
BstDEI CTNAG 4 cut(s) 104, 194, 233, 321
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 5 cut(s) 151, 240, 305, 331, 497
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 3 cut(s) 28, 232, 427
BstMBI GATC 3 cut(s) 25, 229, 424
BstMWI GCNNNNNNNGC 2 cut(s) 441, 533
BstNI CCWGG 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 31, 34
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 5 cut(s) 151, 240, 305, 331, 497
Cfr13I GGNCC 1 cut(s) 404
Cfr42I CCGCGG 1 cut(s) 209
Csp6I GTAC 3 cut(s) 138, 266, 349
CviAII CATG 5 cut(s) 86, 227, 257, 524, 552
CviJI RGCY 6 cut(s) 238, 298, 319, 414, 435, 536
CviKI_1 RGCY 6 cut(s) 238, 298, 319, 414, 435, 536
CviQI GTAC 3 cut(s) 138, 266, 349
DdeI CTNAG 4 cut(s) 104, 194, 233, 321
DpnI GATC 3 cut(s) 27, 231, 426
DpnII GATC 3 cut(s) 25, 229, 424
Eco147I AGGCCT 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 529
FaeI CATG 5 cut(s) 89, 230, 260, 527, 555
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 5 cut(s) 85, 226, 256, 523, 551
FauNDI CATATG 1 cut(s) 544
Fnu4HI GCNGC 3 cut(s) 45, 48, 433
FokI GGATG 5 cut(s) 158, 227, 292, 338, 504
Fsp4HI GCNGC 3 cut(s) 45, 48, 433
FspBI CTAG 1 cut(s) 125
GluI GCNGC 3 cut(s) 45, 48, 433
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 5 cut(s) 89, 230, 260, 527, 555
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 105, 167, 367
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 320, 479
HpyCH4V TGCA 5 cut(s) 77, 444, 478, 527, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 533
HpyF3I CTNAG 4 cut(s) 104, 194, 233, 321
Hsp92II CATG 5 cut(s) 89, 230, 260, 527, 555
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 3 cut(s) 25, 229, 424
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 7 cut(s) 25, 45, 54, 168, 254, 420, 458
Lsp1109I GCAGC 2 cut(s) 31, 34
LweI GCATC 2 cut(s) 314, 453
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 27, 231, 426
MboI GATC 3 cut(s) 25, 229, 424
MboII GAAGA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 34, 268
MnlI CCTC 3 cut(s) 161, 371, 499
Mph1103I ATGCAT 1 cut(s) 529
MseI TTAA 4 cut(s) 65, 282, 336, 530
MspA1I CMGCKG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 441, 533
NdeI CATATG 1 cut(s) 544
NdeII GATC 3 cut(s) 25, 229, 424
NlaIII CATG 5 cut(s) 89, 230, 260, 527, 555
NlaIV GGNNCC 2 cut(s) 121, 405
NsiI ATGCAT 1 cut(s) 529
PceI AGGCCT 1 cut(s) 319
PkrI GCNGC 3 cut(s) 46, 49, 434
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PpuMI RGGWCCY 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 121, 405
PspPI GGNCC 1 cut(s) 404
PspPPI RGGWCCY 1 cut(s) 404
RsaI GTAC 3 cut(s) 139, 267, 350
RsaNI GTAC 3 cut(s) 138, 266, 349
SacII CCGCGG 1 cut(s) 209
SaqAI TTAA 4 cut(s) 65, 282, 336, 530
SatI GCNGC 3 cut(s) 45, 48, 433
Sau3AI GATC 3 cut(s) 25, 229, 424
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 139
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 13
SetI ASST 4 cut(s) 250, 300, 416, 471
SfaNI GCATC 2 cut(s) 314, 453
Sfr303I CCGCGG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 1 cut(s) 404
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 3 cut(s) 206, 208, 432
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 11
TatI WGTACW 3 cut(s) 137, 265, 348
TauI GCSGC 1 cut(s) 435
Tru1I TTAA 4 cut(s) 65, 282, 336, 530
Tru9I TTAA 4 cut(s) 65, 282, 336, 530
TseI GCWGC 2 cut(s) 44, 47
TspDTI ATGAA 3 cut(s) 10, 245, 264
VpaK11BI GGWCC 1 cut(s) 404
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.