Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

82015497 .. 82020087

Gene Structure 4591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGCTTCAAGTTTTGTGTACCTGTTCACCCCACAAGCCTCACATCAAACAGGTTGGTTCTCTTTACTCTCTGTTCTCACTCTTCACCAATAACCACTGCCTCTCAACTACCACTTCTTCATCCCCAATTCCCCATCATCTTCAACAACACACAAAAACCAACACCCAAGTAGATTTATCTCGTAATTGTTTCAATGGTATAGCCCAATCTGTTATATTGAGGTGTTCCCAATATTTTGACAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGAGCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTAGTGAAAAAGTTGAGGGCTTTAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGATTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGTGAGTTAGATAGGGCCATTTCTGTCTATGATCGAATTACGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTGATCAATTGGTGGGAATGAGGAAGACCAAATTGGCGTTTCGAGTTTGTAGTGATATGGCGGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTCTCTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCATTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACACCTAAACCCCCATATATGCACCTATAATGCTCTTATCAGCGGGGTATTTATGGAGGGTATGTGGAAGCACGCTGGGAAGGTGTTTGATGAGATGGTAGAGAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCCGGCTATTGTAAAGTCAGAAATTTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCGTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAGTCACTGGGATCCTAGAAGATTGCATGGTACCTGATTATTACTCTCTTATGATGATAGAATGCAGTCGTAGAAATTTGAAGGGTGCTTTGGTTTTGGCAGATGAAATAATCCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGTATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAATGACGGATGGTTACCAGGGCCGGAAGATAGTAAAGCCTTGATTGAATGTCTTTTCCATAAAGAAATGCTGAGAGAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGATATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCGGTTGTACAGGAATTGCAAGCATATTGTTAGGAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAAGGGCAAGAATTTTCATGTGGCCTTTAAAGTGCTGGACAGTATGCTGGCTAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGTGAACTCTTCCTATTCACTTTCTCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATATGTTGTTAAAGCGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTCATTGCAAGGTTAATGACTTAAAGAAAGTTTGGGAGCTACTTTGTGTCATGACAAGAAAAGGTTTCAACATTTCACTCTCAACTTACCGCAACTTGGTGTGTTTGATGTGTCTGGAAGATGTGTCGAGTGCTGTGGATCATCTGTACACTATGATCTCTAAGGATTTCAGGCCAAGCAACCGCAACTTGAGAAAAGTTATAACCAGCCTGTGTGATGTTGGGGAGATTGAGAAAGCCTTGGAACTGAGTCGAGAAATGGAATTGAGAGGCCAGATTCATGATTCAATGATTCAAAATGCGATTGTTGAGGGTCTTTCTTCTCGTGGTAGGATTCAAGAAGCTGAAAGTTTTCTGGACAGGATGGTAGAGAAATGTCTAATTCCAGAAAATGTCAACTATAATAATCTAATCAAACTGTTTTGCTCGTATGGAAGACCAAACAAGGCAGTTAATTCTCTGAACATAATGCTGAAGAAAGGGAATGTTCCAGATTCTACCAGTTTTGATTCCATCATCAGCTCTTTCTGTGCCCTTGGTAATCTGGAGCAAGCTATGGATTTTCATGCTGAGATGTTGGATAGAAATCTTAAGCCAAGCATCGACACTTGGGACATTCTGGTCCATAACTTTTGTCAAGATGGAAAAACAGCAGAGGCAGAAAGGCTATTGAAGTCTATGGGTTGTGCAGGTGAAACAGTGACCAGGAAGATATATCTGTCTGTAATTAATAGTTATCGCTCAGAGAACAATCTCGGAAAGGTCTCGGAGCTCATGCAAGCAATGCAACAGAGTGGTTATGAGCCAGACTTCGAGACACATTGGTCTCTCATAAGGAACCTAAGAGTTTCTAGTGACAAGGACAATGCAAACAGCAGCAAGGGTTTCCTGTCAAAGCTTCTCTCTGCAAGTGGATTTTCTAGGCAAAAATATTCCAAGGCCAAACAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

1128

Amino Acids

127.05

Weight (kDa)

7.75

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	305 - 360	6.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	350 - 399	3e-14	PPR repeat family
PPR	PF01535	354 - 382	1e-05	PPR repeat
PPR_2	PF13041	801 - 849	1.7e-07	PPR repeat family
PPR_2	PF13041	941 - 988	4.1e-09	PPR repeat family
PPR_2	PF13041	975 - 1024	2.3e-09	PPR repeat family
PPR_1	PF12854	1006 - 1038	9.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2103, 2636
AarI	CACCTGC	1 cut(s)	3113
AasI	GACNNNNNNGTC	2 cut(s)	3053, 3256
Acc16I	TGCGCA	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	3113
Acc65I	GGTACC	1 cut(s)	1459
AccB1I	GGYRCC	1 cut(s)	1459
AccI	GTMKAC	1 cut(s)	1163
AciI	CCGC	7 cut(s)	334, 779, 1080, 1280, 2392, 2524, 2617
AclWI	GGATC	7 cut(s)	1271, 1284, 1435, 1448, 1999, 2097, 2580
AcsI	RAATTY	8 cut(s)	441, 600, 927, 1204, 1504, 2137, 2182, 2412
AcuI	CTGAAG	1 cut(s)	2927
AfaI	GTAC	4 cut(s)	19, 1461, 2035, 2582
AfiI	CCNNNNNNNGG	4 cut(s)	289, 2197, 2530, 3381
AflII	CTTAAG	2 cut(s)	1981, 3023
AgeI	ACCGGT	1 cut(s)	2027
AhdI	GACNNNNNGTC	1 cut(s)	1984
AjnI	CCWGG	4 cut(s)	1410, 1876, 2085, 3137
AjuI	GAANNNNNNNTTGG	4 cut(s)	734, 766, 1502, 1534
Alw21I	GWGCWC	1 cut(s)	3207
Alw26I	GTCTC	5 cut(s)	833, 1775, 3202, 3242, 3264
AlwI	GGATC	7 cut(s)	1271, 1284, 1435, 1448, 1999, 2097, 2580
AoxI	GGCC	9 cut(s)	507, 651, 813, 1880, 2148, 2187, 2606, 2704, 3372
ApeKI	GCWGC	2 cut(s)	1945, 3309
ApoI	RAATTY	8 cut(s)	441, 600, 927, 1204, 1504, 2137, 2182, 2412
ArsI	GACNNNNNNTTYG	2 cut(s)	2003, 2035
AseI	ATTAAT	2 cut(s)	2216, 3162
AsiGI	ACCGGT	1 cut(s)	2027
Asp700I	GAANNNNTTC	2 cut(s)	1959, 2784
Asp718I	GGTACC	1 cut(s)	1459
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	4 cut(s)	651, 1880, 2188, 3055
AsuHPI	GGTGA	6 cut(s)	18, 76, 650, 1618, 1753, 3137
AvaII	GGWCC	1 cut(s)	3055
BaeGI	GKGCMC	2 cut(s)	838, 2968
BamHI	GGATCC	2 cut(s)	1276, 1440
BanI	GGYRCC	1 cut(s)	1459
BanII	GRGCYC	1 cut(s)	3207
BauI	CACGAG	1 cut(s)	2757
BbsI	GAAGAC	3 cut(s)	749, 1042, 2875
Bbv12I	GWGCWC	1 cut(s)	3207
BbvI	GCAGC	2 cut(s)	1957, 3321
BccI	CCATC	8 cut(s)	141, 700, 1126, 1863, 2089, 2791, 2954, 3068
BceAI	ACGGC	1 cut(s)	1720
BciT130I	CCWGG	4 cut(s)	1412, 1878, 2087, 3139
BciVI	GTATCC	2 cut(s)	1396, 2388
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	5 cut(s)	833, 1775, 3202, 3242, 3264
BfaI	CTAG	6 cut(s)	417, 1445, 1667, 2309, 3285, 3354
BfmI	CTRYAG	1 cut(s)	2372
BfrI	CTTAAG	2 cut(s)	1981, 3023
BfuAI	ACCTGC	1 cut(s)	3113
BfuI	GTATCC	2 cut(s)	1396, 2388
BisI	GCNGC	2 cut(s)	1946, 3310
BlsI	GCNGC	2 cut(s)	1947, 3311
Bme1390I	CCNGG	4 cut(s)	1412, 1878, 2087, 3139
Bme18I	GGWCC	1 cut(s)	3055
BmeRI	GACNNNNNGTC	1 cut(s)	1984
BmgT120I	GGNCC	4 cut(s)	651, 1880, 2188, 3055
BmiI	GGNNCC	6 cut(s)	345, 1278, 1442, 1461, 2190, 3272
BmrFI	CCNGG	4 cut(s)	1412, 1878, 2087, 3139
BmrI	ACTGGG	2 cut(s)	386, 1446
BmsI	GCATC	5 cut(s)	1610, 1771, 2091, 2395, 3042
BmuI	ACTGGG	2 cut(s)	386, 1446
BpiI	GAAGAC	3 cut(s)	749, 1042, 2875
BpmI	CTGGAG	2 cut(s)	997, 2999
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	1846, 2644
BsaBI	GATNNNNATC	2 cut(s)	1275, 3018
BsaI	GGTCTC	3 cut(s)	833, 3202, 3264
BsaJI	CCNNGG	6 cut(s)	1246, 1617, 1877, 2673, 2968, 3369
BsaWI	WCCGGW	2 cut(s)	1542, 2027
BsaXI	ACNNNNNCTCC	4 cut(s)	970, 1000, 1085, 1115
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 2197, 2530, 3381
Bse118I	RCCGGY	2 cut(s)	1184, 2027
Bse1I	ACTGG	3 cut(s)	381, 1441, 2934
Bse3DI	GCAATG	3 cut(s)	695, 2437, 3222
Bse8I	GATNNNNATC	2 cut(s)	1275, 3018
BseBI	CCWGG	4 cut(s)	1412, 1878, 2087, 3139
BseDI	CCNNGG	6 cut(s)	1246, 1617, 1877, 2673, 2968, 3369
BseGI	GGATG	6 cut(s)	119, 1601, 1874, 2082, 2206, 2802
BseJI	GATNNNNATC	2 cut(s)	1275, 3018
BseLI	CCNNNNNNNGG	4 cut(s)	289, 2197, 2530, 3381
BseMI	GCAATG	3 cut(s)	695, 2437, 3222
BseMII	CTCAG	6 cut(s)	503, 1922, 2237, 2672, 2994, 3189
BseNI	ACTGG	3 cut(s)	381, 1441, 2934
BseSI	GKGCMC	2 cut(s)	838, 2968
BseXI	GCAGC	2 cut(s)	1957, 3321
BseYI	CCCAGC	2 cut(s)	851, 1112
BsgI	GTGCAG	2 cut(s)	1964, 3141
BshFI	GGCC	9 cut(s)	509, 653, 815, 1882, 2150, 2189, 2608, 2706, 3374
BshNI	GGYRCC	1 cut(s)	1459
BshTI	ACCGGT	1 cut(s)	2027
BsiHKAI	GWGCWC	1 cut(s)	3207
BsiSI	CCGG	4 cut(s)	1185, 1543, 1883, 2028
BslFI	GGGAC	4 cut(s)	904, 1159, 1563, 3059
BslI	CCNNNNNNNGG	4 cut(s)	289, 2197, 2530, 3381
BsmAI	GTCTC	5 cut(s)	833, 1775, 3202, 3242, 3264
BsmFI	GGGAC	4 cut(s)	904, 1159, 1563, 3059
BsmI	GAATGC	4 cut(s)	868, 1496, 1843, 1959
BsnI	GGCC	9 cut(s)	509, 653, 815, 1882, 2150, 2189, 2608, 2706, 3374
Bso31I	GGTCTC	3 cut(s)	833, 3202, 3264
Bsp1286I	GDGCHC	3 cut(s)	838, 2968, 3207
Bsp1407I	TGTACA	2 cut(s)	2033, 2580
Bsp19I	CCATGG	1 cut(s)	1246
BspACI	CCGC	7 cut(s)	334, 779, 1080, 1280, 2392, 2524, 2617
BspANI	GGCC	9 cut(s)	509, 653, 815, 1882, 2150, 2189, 2608, 2706, 3374
BspCNI	CTCAG	6 cut(s)	502, 1923, 2236, 2673, 2995, 3188
BspHI	TCATGA	3 cut(s)	966, 2484, 2713
BspLI	GGNNCC	6 cut(s)	345, 1278, 1442, 1461, 2190, 3272
BspMI	ACCTGC	1 cut(s)	3113
BspPI	GGATC	7 cut(s)	1271, 1284, 1435, 1448, 1999, 2097, 2580
BspQI	GCTCTTC	1 cut(s)	892
BspT107I	GGYRCC	1 cut(s)	1459
BspTI	CTTAAG	2 cut(s)	1981, 3023
BspTNI	GGTCTC	3 cut(s)	833, 3202, 3264
BsrDI	GCAATG	3 cut(s)	695, 2437, 3222
BsrFI	RCCGGY	2 cut(s)	1184, 2027
BsrGI	TGTACA	2 cut(s)	2033, 2580
BsrI	ACTGG	3 cut(s)	381, 1441, 2934
BssAI	RCCGGY	2 cut(s)	1184, 2027
BssECI	CCNNGG	6 cut(s)	1246, 1617, 1877, 2673, 2968, 3369
BssSI	CACGAG	1 cut(s)	2757
BssT1I	CCWWGG	5 cut(s)	1246, 1617, 2673, 2968, 3369
Bst2BI	CACGAG	1 cut(s)	2757
Bst2UI	CCWGG	4 cut(s)	1412, 1878, 2087, 3139
Bst4CI	ACNGT	5 cut(s)	608, 2168, 2209, 2853, 3133
Bst6I	CTCTTC	4 cut(s)	86, 892, 1328, 2296
BstAFI	CTTAAG	2 cut(s)	1981, 3023
BstAPI	GCANNNNNTGC	1 cut(s)	3217
BstAUI	TGTACA	2 cut(s)	2033, 2580
BstC8I	GCNNGC	8 cut(s)	1110, 1186, 1243, 1843, 2047, 2175, 2985, 3213
BstDSI	CCRYGG	1 cut(s)	1246
BstEII	GGTNACC	2 cut(s)	952, 1872
BstF5I	GGATG	6 cut(s)	119, 1601, 1874, 2082, 2206, 2802
BstHHI	GCGC	1 cut(s)	400
BstMAI	GTCTC	5 cut(s)	833, 1775, 3202, 3242, 3264
BstMWI	GCNNNNNNNGC	4 cut(s)	397, 688, 697, 3217
BstNI	CCWGG	4 cut(s)	1412, 1878, 2087, 3139
BstPI	GGTNACC	2 cut(s)	952, 1872
BstSCI	CCNGG	4 cut(s)	1410, 1876, 2085, 3137
BstSFI	CTRYAG	1 cut(s)	2372
BstSLI	GKGCMC	2 cut(s)	838, 2968
BstV1I	GCAGC	2 cut(s)	1957, 3321
BstV2I	GAAGAC	3 cut(s)	749, 1042, 2875
BstX2I	RGATCY	2 cut(s)	1276, 1440
BstYI	RGATCY	2 cut(s)	1276, 1440
BsuI	GTATCC	2 cut(s)	1396, 2388
BsuRI	GGCC	9 cut(s)	509, 653, 815, 1882, 2150, 2189, 2608, 2706, 3374
BtgI	CCRYGG	1 cut(s)	1246
BtsCI	GGATG	6 cut(s)	119, 1601, 1874, 2082, 2206, 2802
BtsI	GCAGTG	5 cut(s)	94, 398, 707, 1788, 1947
BtsIMutI	CAGTG	8 cut(s)	94, 398, 613, 707, 1434, 1788, 1947, 3138
BveI	ACCTGC	1 cut(s)	3113
Cac8I	GCNNGC	8 cut(s)	1110, 1186, 1243, 1843, 2047, 2175, 2985, 3213
CciI	TCATGA	3 cut(s)	966, 2484, 2713
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	2 cut(s)	1184, 2027
Cfr13I	GGNCC	4 cut(s)	651, 1880, 2188, 3055
Csp6I	GTAC	4 cut(s)	18, 1460, 2034, 2581
CspAI	ACCGGT	1 cut(s)	2027
CspCI	CAANNNNNGTGG	2 cut(s)	1719, 1754
CviQI	GTAC	4 cut(s)	18, 1460, 2034, 2581
DraI	TTTAAA	1 cut(s)	2155
DrdI	GACNNNNNNGTC	2 cut(s)	3053, 3256
DriI	GACNNNNNGTC	1 cut(s)	1984
DseDI	GACNNNNNNGTC	2 cut(s)	3053, 3256
Eam1104I	CTCTTC	4 cut(s)	86, 892, 1328, 2296
Eam1105I	GACNNNNNGTC	1 cut(s)	1984
EarI	CTCTTC	4 cut(s)	86, 892, 1328, 2296
EciI	GGCGGA	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	3205
Eco130I	CCWWGG	5 cut(s)	1246, 1617, 2673, 2968, 3369
Eco24I	GRGCYC	1 cut(s)	3207
Eco31I	GGTCTC	3 cut(s)	833, 3202, 3264
Eco32I	GATATC	1 cut(s)	1968
Eco47I	GGWCC	1 cut(s)	3055
Eco53kI	GAGCTC	1 cut(s)	3205
Eco57I	CTGAAG	1 cut(s)	2927
Eco91I	GGTNACC	2 cut(s)	952, 1872
EcoICRI	GAGCTC	1 cut(s)	3205
EcoO65I	GGTNACC	2 cut(s)	952, 1872
EcoRII	CCWGG	4 cut(s)	1410, 1876, 2085, 3137
EcoRV	GATATC	1 cut(s)	1968
EcoT14I	CCWWGG	5 cut(s)	1246, 1617, 2673, 2968, 3369
EcoT22I	ATGCAT	1 cut(s)	870
EcoT38I	GRGCYC	1 cut(s)	3207
ErhI	CCWWGG	5 cut(s)	1246, 1617, 2673, 2968, 3369
FalI	AAGNNNNNCTT	6 cut(s)	270, 302, 348, 380, 1637, 1669
FaqI	GGGAC	4 cut(s)	904, 1159, 1563, 3059
FauI	CCCGC	2 cut(s)	327, 1073
FauNDI	CATATG	1 cut(s)	2001
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	1163
Fnu4HI	GCNGC	2 cut(s)	1946, 3310
FokI	GGATG	6 cut(s)	106, 1588, 1881, 2069, 2213, 2809
FriOI	GRGCYC	1 cut(s)	3207
Fsp4HI	GCNGC	2 cut(s)	1946, 3310
FspBI	CTAG	6 cut(s)	417, 1445, 1667, 2309, 3285, 3354
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	2 cut(s)	1946, 3310
GsaI	CCCAGC	2 cut(s)	855, 1116
GsuI	CTGGAG	2 cut(s)	997, 2999
HaeIII	GGCC	9 cut(s)	509, 653, 815, 1882, 2150, 2189, 2608, 2706, 3374
HapII	CCGG	4 cut(s)	1185, 1543, 1883, 2028
HhaI	GCGC	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	3 cut(s)	1164, 2260, 2830
HindII	GTYRAC	3 cut(s)	1164, 2260, 2830
HindIII	AAGCTT	3 cut(s)	1646, 2015, 3329
HpaI	GTTAAC	1 cut(s)	2260
HpaII	CCGG	4 cut(s)	1185, 1543, 1883, 2028
HphI	GGTGA	6 cut(s)	18, 76, 650, 1618, 1753, 3137
Hpy166II	GTNNAC	9 cut(s)	18, 26, 989, 1015, 1164, 2260, 2287, 2583, 2830
Hpy8I	GTNNAC	9 cut(s)	18, 26, 989, 1015, 1164, 2260, 2287, 2583, 2830
HpyAV	CCTTC	4 cut(s)	293, 805, 1111, 1504
HpyCH4III	ACNGT	5 cut(s)	608, 2168, 2209, 2853, 3133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	397, 688, 697, 3217
HspAI	GCGC	1 cut(s)	398
KpnI	GGTACC	1 cut(s)	1463
KroI	GCCGGC	1 cut(s)	1184
KroNI	GCCGGC	1 cut(s)	1186
Ksp22I	TGATCA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	2260
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	6 cut(s)	343, 978, 1831, 2470, 2980, 3202
Lsp1109I	GCAGC	2 cut(s)	1957, 3321
LweI	GCATC	5 cut(s)	1610, 1771, 2091, 2395, 3042
MaeI	CTAG	6 cut(s)	417, 1445, 1667, 2309, 3285, 3354
MaeIII	GTNAC	9 cut(s)	952, 1324, 1432, 1872, 2023, 2203, 2350, 3133, 3287
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	2 cut(s)	1276, 1440
MhlI	GDGCHC	3 cut(s)	838, 2968, 3207
MlyI	GAGTC	3 cut(s)	437, 1440, 2692
MmeI	TCCRAC	4 cut(s)	385, 567, 1602, 2991
Mph1103I	ATGCAT	1 cut(s)	870
MroNI	GCCGGC	1 cut(s)	1184
MroXI	GAANNNNTTC	2 cut(s)	1959, 2784
MslI	CAYNNNNRTG	1 cut(s)	700
MspA1I	CMGCKG	1 cut(s)	1080
MspCI	CTTAAG	2 cut(s)	1981, 3023
MspI	CCGG	4 cut(s)	1185, 1543, 1883, 2028
MspR9I	CCNGG	4 cut(s)	1412, 1878, 2087, 3139
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	4 cut(s)	868, 1496, 1843, 1959
MvaI	CCWGG	4 cut(s)	1412, 1878, 2087, 3139
MwoI	GCNNNNNNNGC	4 cut(s)	397, 688, 697, 3217
NaeI	GCCGGC	1 cut(s)	1186
NcoI	CCATGG	1 cut(s)	1246
NdeI	CATATG	1 cut(s)	2001
NgoMIV	GCCGGC	1 cut(s)	1184
NlaIV	GGNNCC	6 cut(s)	345, 1278, 1442, 1461, 2190, 3272
NmuCI	GTSAC	4 cut(s)	1324, 1432, 3133, 3287
NsbI	TGCGCA	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	870
PagI	TCATGA	3 cut(s)	966, 2484, 2713
PaqCI	CACCTGC	1 cut(s)	3113
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	4 cut(s)	868, 1496, 1843, 1959
PdiI	GCCGGC	1 cut(s)	1186
PdmI	GAANNNNTTC	2 cut(s)	1959, 2784
PfeI	GAWTC	9 cut(s)	963, 1174, 1255, 2710, 2717, 2725, 2767, 2927, 2942
PfoI	TCCNGGA	1 cut(s)	2085
PinAI	ACCGGT	1 cut(s)	2027
PkrI	GCNGC	2 cut(s)	1947, 3311
PleI	GAGTC	3 cut(s)	436, 1439, 2691
PpsI	GAGTC	3 cut(s)	436, 1439, 2691
PshBI	ATTAAT	2 cut(s)	2216, 3162
PsiI	TTATAA	2 cut(s)	2103, 2636
Psp124BI	GAGCTC	1 cut(s)	3207
Psp6I	CCWGG	4 cut(s)	1410, 1876, 2085, 3137
PspEI	GGTNACC	2 cut(s)	952, 1872
PspFI	CCCAGC	2 cut(s)	851, 1112
PspGI	CCWGG	4 cut(s)	1410, 1876, 2085, 3137
PspN4I	GGNNCC	6 cut(s)	345, 1278, 1442, 1461, 2190, 3272
PspPI	GGNCC	4 cut(s)	651, 1880, 2188, 3055
PsuI	RGATCY	2 cut(s)	1276, 1440
RsaI	GTAC	4 cut(s)	19, 1461, 2035, 2582
RsaNI	GTAC	4 cut(s)	18, 1460, 2034, 2581
RseI	CAYNNNNRTG	1 cut(s)	700
SacI	GAGCTC	1 cut(s)	3207
SalI	GTCGAC	1 cut(s)	1162
SapI	GCTCTTC	1 cut(s)	892
SatI	GCNGC	2 cut(s)	1946, 3310
Sau96I	GGNCC	4 cut(s)	651, 1880, 2188, 3055
SchI	GAGTC	3 cut(s)	437, 1440, 2692
ScrFI	CCNGG	4 cut(s)	1412, 1878, 2087, 3139
SduI	GDGCHC	3 cut(s)	838, 2968, 3207
SfaNI	GCATC	5 cut(s)	1610, 1771, 2091, 2395, 3042
SfcI	CTRYAG	1 cut(s)	2372
SinI	GGWCC	1 cut(s)	3055
SmiMI	CAYNNNNRTG	1 cut(s)	700
SmlI	CTYRAG	4 cut(s)	1825, 1981, 2623, 3023
SmoI	CTYRAG	4 cut(s)	1825, 1981, 2623, 3023
SsiI	CCGC	7 cut(s)	334, 779, 1080, 1280, 2392, 2524, 2617
SspI	AATATT	4 cut(s)	233, 1852, 2110, 3365
SspMI	CTAG	6 cut(s)	417, 1445, 1667, 2309, 3285, 3354
SstI	GAGCTC	1 cut(s)	3207
StyD4I	CCNGG	4 cut(s)	1410, 1876, 2085, 3137
StyI	CCWWGG	5 cut(s)	1246, 1617, 2673, 2968, 3369
TaaI	ACNGT	5 cut(s)	608, 2168, 2209, 2853, 3133
TaqI	TCGA	7 cut(s)	670, 760, 1163, 2561, 2686, 3036, 3246
TatI	WGTACW	2 cut(s)	2033, 2580
TfiI	GAWTC	9 cut(s)	963, 1174, 1255, 2710, 2717, 2725, 2767, 2927, 2942
TscAI	CASTG	8 cut(s)	101, 398, 613, 707, 1441, 1795, 1947, 3138
TseFI	GTSAC	4 cut(s)	1324, 1432, 3133, 3287
TseI	GCWGC	2 cut(s)	1945, 3309
Tsp45I	GTSAC	4 cut(s)	1324, 1432, 3133, 3287
TspDTI	ATGAA	6 cut(s)	108, 1227, 1548, 2132, 2702, 2987
TspGWI	ACGGA	1 cut(s)	1881
TspRI	CASTG	8 cut(s)	101, 398, 613, 707, 1441, 1795, 1947, 3138
Vha464I	CTTAAG	2 cut(s)	1981, 3023
VpaK11BI	GGWCC	1 cut(s)	3055
VspI	ATTAAT	2 cut(s)	2216, 3162
XapI	RAATTY	8 cut(s)	441, 600, 927, 1204, 1504, 2137, 2182, 2412
XbaI	TCTAGA	1 cut(s)	2308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1294
XmiI	GTMKAC	1 cut(s)	1163
XmnI	GAANNNNTTC	2 cut(s)	1959, 2784
XspI	CTAG	6 cut(s)	417, 1445, 1667, 2309, 3285, 3354
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.