Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

49226628 .. 49229201

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGCTTGACGAAAATGTGGAGAAGATGCAGCAACGGCAGCACTACAAGAATCTATGGCACACCGATTTGATGGGCACCATCACTGCCGATACTGGCTGGAACAATGTGGCTGCTGAGAAAATGAGGGAATTCAAGAGAGTGGAATGCTCAATCGGTTATTGTGCTTCTTACATGTTACGGAAACGAGCTCTTTATGATGATATGACAAGGTACAAATGCTGTGGTGGATATTTTCCATGCAGTGGAAAATGTGGAGAAAGTAAATGCCCTGAATTTTGTCTCGTCACTGAGGTTTGCTGCTGCTTTGGAACGTCTGTTTCTTCAACTCGATATCTACTACAAGATGAATTCAACATACAGACGACTCCATGCGATAACTGCATCATTGGATTTATGATCATCCTAAAACAAGTTGCATGTATATTCTCCATACTTGCTTGCATAACTGGAAGTGAAGAAATCAGGGATATTGCCGATGTATTGGGCTGCATTGCAGAAATAGTTTATTGCTCGGTCTGTGCTTGCATTCAGACCCAGCACAAAGTTGAAATGGACAAAAGAGACAACAAGTTAGATCCACAGCCAGCTATGGGAGTTCCTCTGACGCAGCACATGTCCCGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.65

Weight (kDa)

6.09

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	245
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	3 cut(s)	131, 275, 350
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	245, 593
AflIII	ACRYGT	2 cut(s)	174, 615
AgsI	TTSAA	4 cut(s)	136, 327, 355, 551
AluBI	AGCT	2 cut(s)	191, 590
AluI	AGCT	2 cut(s)	191, 590
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	287, 558
AlwI	GGATC	1 cut(s)	572
ApeKI	GCWGC	7 cut(s)	31, 40, 113, 300, 303, 489, 610
ApoI	RAATTY	3 cut(s)	131, 275, 350
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	7 cut(s)	43, 52, 100, 287, 290, 476, 622
BccI	CCATC	2 cut(s)	67, 89
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	287, 558
BisI	GCNGC	7 cut(s)	32, 41, 114, 301, 304, 490, 611
BlsI	GCNGC	7 cut(s)	33, 42, 115, 302, 305, 491, 612
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	2 cut(s)	18, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 593
Bse1I	ACTGG	2 cut(s)	100, 454
Bse3DI	GCAATG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	245, 593
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	108, 282
BseNI	ACTGG	2 cut(s)	100, 454
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	7 cut(s)	43, 52, 100, 287, 290, 476, 622
BseYI	CCCAGC	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	245, 593
BsmAI	GTCTC	2 cut(s)	287, 558
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	2 cut(s)	152, 528
Bsp1286I	GDGCHC	2 cut(s)	80, 193
Bsp143I	GATC	2 cut(s)	399, 577
BspCNI	CTCAG	2 cut(s)	109, 283
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	100, 454
BssMI	GATC	2 cut(s)	399, 577
BstC8I	GCNNGC	3 cut(s)	442, 526, 588
BstDEI	CTNAG	2 cut(s)	117, 291
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	2 cut(s)	402, 580
BstMAI	GTCTC	2 cut(s)	287, 558
BstMBI	GATC	2 cut(s)	399, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 40, 381
BstNSI	RCATGY	3 cut(s)	178, 423, 619
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	7 cut(s)	43, 52, 100, 287, 290, 476, 622
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	402
BtsI	GCAGTG	2 cut(s)	84, 250
BtsIMutI	CAGTG	3 cut(s)	84, 250, 288
Cac8I	GCNNGC	3 cut(s)	442, 526, 588
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	5 cut(s)	175, 240, 372, 420, 616
CviJI	RGCY	7 cut(s)	7, 99, 113, 191, 489, 586, 590
CviKI_1	RGCY	7 cut(s)	7, 99, 113, 191, 489, 586, 590
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	117, 291
DpnI	GATC	2 cut(s)	401, 579
DpnII	GATC	2 cut(s)	399, 577
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRI	GAATTC	2 cut(s)	131, 350
EcoRV	GATATC	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	5 cut(s)	178, 243, 375, 423, 619
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	5 cut(s)	174, 239, 371, 419, 615
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	7 cut(s)	32, 41, 114, 301, 304, 490, 611
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	7 cut(s)	32, 41, 114, 301, 304, 490, 611
GluI	GCNGC	7 cut(s)	32, 41, 114, 301, 304, 490, 611
GsaI	CCCAGC	1 cut(s)	541
HgaI	GACGC	1 cut(s)	616
Hin1II	CATG	5 cut(s)	178, 243, 375, 423, 619
HinfI	GANTC	2 cut(s)	52, 367
Hpy188I	TCNGA	2 cut(s)	534, 606
Hpy188III	TCNNGA	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	8 cut(s)	31, 243, 384, 419, 444, 492, 497, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 40, 381
HpyF3I	CTNAG	2 cut(s)	117, 291
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	5 cut(s)	178, 243, 375, 423, 619
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	399, 577
LpnPI	CCDG	7 cut(s)	81, 85, 285, 435, 451, 551, 600
Lsp1109I	GCAGC	7 cut(s)	43, 52, 100, 287, 290, 476, 622
LweI	GCATC	2 cut(s)	18, 393
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	177, 286
MalI	GATC	2 cut(s)	401, 579
MboI	GATC	2 cut(s)	399, 577
MboII	GAAGA	3 cut(s)	37, 315, 470
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	80, 193
MluCI	AATT	3 cut(s)	131, 275, 350
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	120, 286, 612
Mva1269I	GAATGC	2 cut(s)	152, 528
MwoI	GCNNNNNNNGC	3 cut(s)	37, 40, 381
NdeII	GATC	2 cut(s)	399, 577
NlaIII	CATG	5 cut(s)	178, 243, 375, 423, 619
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	3 cut(s)	178, 423, 619
PciI	ACATGT	2 cut(s)	174, 615
PctI	GAATGC	2 cut(s)	152, 528
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	33, 42, 115, 302, 305, 491, 612
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	2 cut(s)	174, 615
Psp124BI	GAGCTC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	193
SatI	GCNGC	7 cut(s)	32, 41, 114, 301, 304, 490, 611
Sau3AI	GATC	2 cut(s)	399, 577
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	80, 193
SetI	ASST	5 cut(s)	193, 215, 297, 317, 592
SfaNI	GCATC	2 cut(s)	18, 393
Sse9I	AATT	3 cut(s)	131, 275, 350
SstI	GAGCTC	1 cut(s)	193
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	331
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	3 cut(s)	131, 275, 350
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	3 cut(s)	91, 250, 295
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	7 cut(s)	31, 40, 113, 300, 303, 489, 610
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	3 cut(s)	91, 250, 295
Van91I	CCANNNNNTGG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	131, 275, 350
XceI	RCATGY	3 cut(s)	178, 423, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.