RchiOBHm_Chr1g0358911

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001730
Physical Location & Seq
Reverse (-)
50882571 .. 50884388
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATACCATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTTCCGTTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGAAGAACGATTGAGGGTGAACATGAGGATGAAAAAGTTATAGTAGAAAGTGAAGGAACATCAAGAAAAAGTAGGAGAAAAGCTTGGTTCTCCATACAAAGTCCCAGTTTTCTATTGCTCTCTCTCTTCACAAGTTTCTCTCAGAGAATAGGGACGGAGGCTCAGTACATCACCGCGAAAACGTCAGAGTGGTGGGACATAGAACTTCCTGATCCCTTTGGCGACAGCCACGCCATTGCCCAGAACATAAAGCCAGTCATCGTCAAATTGAACTACAACGACCCATTCTCAACCTCCCACTACGGCGACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

257

Amino Acids

29.58

Weight (kDa)

6.33

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 137 7.8e-21 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 68, 407, 429
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 635
AciI CCGC 1 cut(s) 633
AclWI GGATC 2 cut(s) 462, 665
AcsI RAATTY 4 cut(s) 76, 83, 251, 338
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 2 cut(s) 28, 730
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 462, 665
ApoI RAATTY 4 cut(s) 76, 83, 251, 338
Asp700I GAANNNNTTC 2 cut(s) 219, 252
AsuHPI GGTGA 2 cut(s) 488, 622
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 312, 321
BfuAI ACCTGC 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 4 cut(s) 54, 118, 217, 298
BmuI ACTGGG 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 233, 234
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 433, 564, 713
Bse3DI GCAATG 2 cut(s) 130, 693
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 4 cut(s) 45, 217, 334, 493
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 130, 693
BseMII CTCAG 3 cut(s) 372, 614, 635
BseNI ACTGG 3 cut(s) 433, 564, 713
Bsh1236I CGCG 1 cut(s) 635
BslFI GGGAC 3 cut(s) 546, 625, 668
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 3 cut(s) 546, 625, 668
Bsp143I GATC 2 cut(s) 454, 670
BspACI CCGC 1 cut(s) 633
BspCNI CTCAG 3 cut(s) 373, 613, 634
BspFNI CGCG 1 cut(s) 635
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 462, 665
BsrDI GCAATG 2 cut(s) 130, 693
BsrI ACTGG 3 cut(s) 433, 564, 713
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 2 cut(s) 454, 670
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 160, 180
Bst6I CTCTTC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 381, 600, 621
BstF5I GGATG 4 cut(s) 45, 217, 334, 493
BstFNI CGCG 1 cut(s) 635
BstKTI GATC 2 cut(s) 457, 673
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 454, 670
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 635
BtsCI GGATG 4 cut(s) 45, 217, 334, 493
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 625
CviAII CATG 3 cut(s) 39, 287, 482
CviJI RGCY 7 cut(s) 284, 320, 350, 542, 620, 687, 712
CviKI_1 RGCY 7 cut(s) 284, 320, 350, 542, 620, 687, 712
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 381, 600, 621
DpnI GATC 2 cut(s) 456, 672
DpnII GATC 2 cut(s) 454, 670
DraI TTTAAA 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Eco32I GATATC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 390
FaeI CATG 3 cut(s) 42, 290, 485
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 3 cut(s) 546, 625, 668
FatI CATG 3 cut(s) 38, 286, 481
FokI GGATG 4 cut(s) 32, 224, 341, 500
FspBI CTAG 2 cut(s) 312, 321
Hin1II CATG 3 cut(s) 42, 290, 485
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 3 cut(s) 170, 185, 290
HphI GGTGA 2 cut(s) 488, 622
Hpy166II GTNNAC 2 cut(s) 244, 479
Hpy188I TCNGA 4 cut(s) 82, 175, 603, 646
Hpy188III TCNNGA 4 cut(s) 224, 257, 522, 668
Hpy8I GTNNAC 2 cut(s) 244, 479
HpyAV CCTTC 1 cut(s) 506
HpyCH4III ACNGT 2 cut(s) 160, 180
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 4 cut(s) 57, 123, 201, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 381, 600, 621
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 3 cut(s) 42, 290, 485
Kzo9I GATC 2 cut(s) 454, 670
LweI GCATC 4 cut(s) 54, 118, 217, 298
MaeI CTAG 2 cut(s) 312, 321
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 1 cut(s) 446
MalI GATC 2 cut(s) 456, 672
MboI GATC 2 cut(s) 454, 670
MboII GAAGA 3 cut(s) 260, 474, 577
MluCI AATT 6 cut(s) 29, 76, 83, 251, 338, 725
MlyI GAGTC 2 cut(s) 179, 284
MnlI CCTC 6 cut(s) 376, 405, 466, 478, 610, 763
MroXI GAANNNNTTC 2 cut(s) 219, 252
MseI TTAA 2 cut(s) 147, 363
MslI CAYNNNNRTG 2 cut(s) 407, 486
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 2 cut(s) 454, 670
NlaIII CATG 3 cut(s) 42, 290, 485
PasI CCCWGGG 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 219, 252
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PsiI TTATAA 3 cut(s) 68, 407, 429
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 2 cut(s) 407, 486
SaqAI TTAA 2 cut(s) 147, 363
Sau3AI GATC 2 cut(s) 454, 670
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 7 cut(s) 92, 104, 362, 544, 644, 755, 773
SfaNI GCATC 4 cut(s) 54, 118, 217, 298
SmiMI CAYNNNNRTG 2 cut(s) 407, 486
Sse9I AATT 6 cut(s) 29, 76, 83, 251, 338, 725
SsiI CCGC 1 cut(s) 633
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 312, 321
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 2 cut(s) 160, 180
TaiI ACGT 1 cut(s) 644
TaqI TCGA 3 cut(s) 73, 392, 398
TasI AATT 6 cut(s) 29, 76, 83, 251, 338, 725
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 147, 363
Tru9I TTAA 2 cut(s) 147, 363
TspDTI ATGAA 4 cut(s) 198, 228, 351, 504
TspGWI ACGGA 3 cut(s) 182, 185, 629
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 4 cut(s) 76, 83, 251, 338
XmnI GAANNNNTTC 2 cut(s) 219, 252
XspI CTAG 2 cut(s) 312, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.