RchiOBHm_Chr1g0367521

Choline-phosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001730
Physical Location & Seq
Reverse (-)
57841756 .. 57843507
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGGGGTGCTTGCTATGTCTATGTTTGAAATTGATAACATGTGGCATCCTTGTTTGCATTTTGCTTATAAGTCGAAATTCTGAATTCAGGTTTCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAATTGTTATGACGGAGTCCGAACGGTATGAATCTCTTTGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAACGAAGAATTTCTTGACAAGCATAATATTGACTATATAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTAGGGCTAGAAAGGATGTATATGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAAAGAACTGAGGGGATATCGACATCGAACATTATAATGAGGATTGTAAAACATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGTATACTAGAAAAGAGCAAACAGAACTTAACTCGACCTCCTACCCTCATTTTCGTTGTTGCAGCTTGGTTCTCCATACAAAGTCCCAGTTTTCTATTGCTCTCTCTCTTCACAAGTTTCTCTCAGAGAATAGGAGCAGGACGGAGGCTCAGTACATCACCGCGAAAACGTCAGAGTGGTGGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

215

Amino Acids

24.56

Weight (kDa)

9.31

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 30 - 137 1.8e-20 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 68, 407, 429
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 463
AccII CGCG 1 cut(s) 622
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 4 cut(s) 76, 83, 251, 338
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 524
AluI AGCT 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 4 cut(s) 76, 83, 251, 338
Asp700I GAANNNNTTC 2 cut(s) 219, 252
AsuHPI GGTGA 1 cut(s) 609
BbvI GCAGC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 3 cut(s) 312, 321, 467
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 4 cut(s) 54, 118, 217, 298
BmuI ACTGGG 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 233, 234
BsaXI ACNNNNNCTCC 4 cut(s) 481, 511, 595, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 433, 546
Bse3DI GCAATG 2 cut(s) 130, 196
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 3 cut(s) 45, 217, 334
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 2 cut(s) 130, 196
BseMII CTCAG 3 cut(s) 372, 596, 622
BseNI ACTGG 2 cut(s) 433, 546
BseXI GCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 622
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 528
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 1 cut(s) 620
BspCNI CTCAG 3 cut(s) 373, 595, 621
BspFNI CGCG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 2 cut(s) 130, 196
BsrI ACTGG 2 cut(s) 433, 546
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 1 cut(s) 454
BssNAI GTATAC 1 cut(s) 464
Bst1107I GTATAC 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 381, 582, 608
BstF5I GGATG 3 cut(s) 45, 217, 334
BstFNI CGCG 1 cut(s) 622
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 1 cut(s) 533
BstZ17I GTATAC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 45, 217, 334
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 39, 287
CviJI RGCY 5 cut(s) 284, 320, 350, 524, 607
CviKI_1 RGCY 5 cut(s) 284, 320, 350, 524, 607
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 381, 582, 608
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraI TTTAAA 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 390
FaeI CATG 2 cut(s) 42, 290
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 38, 286
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 3 cut(s) 32, 224, 341
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 3 cut(s) 312, 321, 467
GluI GCNGC 1 cut(s) 522
Hin1II CATG 2 cut(s) 42, 290
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 170, 185, 290
HphI GGTGA 1 cut(s) 609
Hpy166II GTNNAC 2 cut(s) 244, 464
Hpy188I TCNGA 4 cut(s) 82, 175, 585, 633
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy8I GTNNAC 2 cut(s) 244, 464
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 5 cut(s) 57, 123, 201, 230, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 381, 582, 608
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 2 cut(s) 42, 290
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 593
LpnPI CCDG 8 cut(s) 73, 220, 237, 247, 343, 446, 559, 582
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 4 cut(s) 54, 118, 217, 298
MaeI CTAG 3 cut(s) 312, 321, 467
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 446
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 2 cut(s) 260, 559
MluCI AATT 6 cut(s) 29, 76, 83, 156, 251, 338
MlyI GAGTC 2 cut(s) 179, 284
MnlI CCTC 5 cut(s) 376, 405, 507, 515, 597
MroXI GAANNNNTTC 2 cut(s) 219, 252
MseI TTAA 3 cut(s) 147, 363, 488
MslI CAYNNNNRTG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 454
NlaIII CATG 2 cut(s) 42, 290
NspI RCATGY 1 cut(s) 42
PasI CCCWGGG 1 cut(s) 234
PciI ACATGT 1 cut(s) 38
PdmI GAANNNNTTC 2 cut(s) 219, 252
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 178, 284
PpsI GAGTC 2 cut(s) 178, 284
PscI ACATGT 1 cut(s) 38
PsiI TTATAA 3 cut(s) 68, 407, 429
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 147, 363, 488
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 1 cut(s) 454
SchI GAGTC 2 cut(s) 179, 284
ScrFI CCNGG 1 cut(s) 235
SetI ASST 6 cut(s) 92, 104, 362, 499, 526, 631
SfaNI GCATC 4 cut(s) 54, 118, 217, 298
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 6 cut(s) 29, 76, 83, 156, 251, 338
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 271
SspMI CTAG 3 cut(s) 312, 321, 467
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 631
TaqI TCGA 4 cut(s) 73, 392, 398, 493
TasI AATT 6 cut(s) 29, 76, 83, 156, 251, 338
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 147, 363, 488
Tru9I TTAA 3 cut(s) 147, 363, 488
TseI GCWGC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 198, 228, 351
TspGWI ACGGA 2 cut(s) 182, 616
Tth111I GACNNNGTC 1 cut(s) 169
XapI RAATTY 4 cut(s) 76, 83, 251, 338
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 219, 252
XspI CTAG 3 cut(s) 312, 321, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.