Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGTTTCTTTTGAATCAAGCTAAGGGTTATGCTTTAGCTTCTGAGGAAGAAATCTTTTTGTTCCAAGAGATTTATGGTTTTTGTTTATTAATTCTGTTTCTGATGTGTTCCTTGCTGCAGTTATGGGTGGTACTTCACATTTGTGCAAGGATTTATGTATCTATTTCTGATTATCTTCAAGGCTTTACCACCAAGCAAATGGTAAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTACAGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCCATGGCCACCTTTATTGGTTCTTACCGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

285

Amino Acids

31.93

Weight (kDa)

6.88

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 281	6e-51	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	2 cut(s)	490, 560
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	828
AcuI	CTGAAG	1 cut(s)	568
AfaI	GTAC	3 cut(s)	255, 497, 512
AfiI	CCNNNNNNNGG	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	136, 302, 433, 766, 821
AjnI	CCWGG	1 cut(s)	478
AleI	CACNNNNGTG	1 cut(s)	264
AloI	GAACNNNNNNTCC	2 cut(s)	766, 798
AluBI	AGCT	5 cut(s)	20, 143, 161, 352, 424
AluI	AGCT	5 cut(s)	20, 143, 161, 352, 424
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	538
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	2 cut(s)	64, 238
AseI	ATTAAT	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	544, 613
BalI	TGGCCA	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	76, 225
BccI	CCATC	2 cut(s)	598, 682
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	239, 708
BisI	GCNGC	2 cut(s)	65, 239
BlsI	GCNGC	2 cut(s)	66, 240
Bme1390I	CCNGG	1 cut(s)	480
BmiI	GGNNCC	3 cut(s)	394, 469, 735
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	553, 799
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	2 cut(s)	144, 556
BsaAI	YACGTR	1 cut(s)	799
BsaJI	CCNNGG	4 cut(s)	332, 396, 825, 850
BsaXI	ACNNNNNCTCC	4 cut(s)	683, 713, 766, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	332, 396, 825, 850
BseGI	GGATG	2 cut(s)	568, 790
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	156, 800
BseXI	GCAGC	2 cut(s)	76, 225
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	830
BshNI	GGYRCC	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	1 cut(s)	579
BsmBI	CGTCTC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	374, 619
Bsp143I	GATC	1 cut(s)	543
Bsp19I	CCATGG	2 cut(s)	332, 825
BspACI	CCGC	2 cut(s)	490, 560
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	2 cut(s)	157, 799
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	394, 469, 735
BspMAI	CTGCAG	1 cut(s)	243
BspPI	GGATC	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	733
BssECI	CCNNGG	4 cut(s)	332, 396, 825, 850
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	3 cut(s)	332, 396, 825
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	799
BstDEI	CTNAG	4 cut(s)	144, 165, 556, 786
BstDSI	CCRYGG	2 cut(s)	332, 825
BstF5I	GGATG	2 cut(s)	568, 790
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	2 cut(s)	239, 708
BstSNI	TACGTA	1 cut(s)	799
BstV1I	GCAGC	2 cut(s)	76, 225
BstV2I	GAAGAC	1 cut(s)	344
BstXI	CCANNNNNNTGG	2 cut(s)	322, 688
BsuRI	GGCC	1 cut(s)	830
BtgI	CCRYGG	2 cut(s)	332, 825
BtsCI	GGATG	2 cut(s)	568, 790
CciI	TCATGA	1 cut(s)	505
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	254, 496, 511
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	7 cut(s)	333, 377, 506, 625, 667, 780, 826
CviQI	GTAC	3 cut(s)	254, 496, 511
DdeI	CTNAG	4 cut(s)	144, 165, 556, 786
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	505
Eco105I	TACGTA	1 cut(s)	799
Eco130I	CCWWGG	3 cut(s)	332, 396, 825
Eco24I	GRGCYC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	3 cut(s)	332, 396, 825
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	3 cut(s)	332, 396, 825
Esp3I	CGTCTC	1 cut(s)	579
FaeI	CATG	7 cut(s)	336, 380, 509, 628, 670, 783, 829
FatI	CATG	7 cut(s)	332, 376, 505, 624, 666, 779, 825
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	2 cut(s)	65, 239
FokI	GGATG	2 cut(s)	575, 777
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	65, 239
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	2 cut(s)	65, 239
HaeIII	GGCC	1 cut(s)	830
Hin1II	CATG	7 cut(s)	336, 380, 509, 628, 670, 783, 829
HinfI	GANTC	3 cut(s)	136, 629, 670
HphI	GGTGA	2 cut(s)	544, 613
Hpy166II	GTNNAC	2 cut(s)	328, 722
Hpy188I	TCNGA	5 cut(s)	49, 166, 225, 292, 543
Hpy188III	TCNNGA	2 cut(s)	506, 674
Hpy8I	GTNNAC	2 cut(s)	328, 722
HpyAV	CCTTC	2 cut(s)	481, 536
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	3 cut(s)	513, 572, 798
HpyCH4V	TGCA	6 cut(s)	241, 269, 419, 521, 566, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	4 cut(s)	144, 165, 556, 786
HpySE526I	ACGT	3 cut(s)	513, 572, 798
Hsp92II	CATG	7 cut(s)	336, 380, 509, 628, 670, 783, 829
Kzo9I	GATC	1 cut(s)	543
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	398, 467
Lsp1109I	GCAGC	2 cut(s)	76, 225
LweI	GCATC	2 cut(s)	553, 799
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	3 cut(s)	513, 572, 798
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	7 cut(s)	16, 23, 75, 85, 182, 290, 349
MhlI	GDGCHC	2 cut(s)	374, 619
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	4 cut(s)	68, 213, 643, 758
MluNI	TGGCCA	1 cut(s)	830
MnlI	CCTC	4 cut(s)	160, 480, 513, 845
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	2 cut(s)	111, 212
MslI	CAYNNNNRTG	2 cut(s)	264, 686
Msp20I	TGGCCA	1 cut(s)	830
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	2 cut(s)	332, 825
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	7 cut(s)	336, 380, 509, 628, 670, 783, 829
NlaIV	GGNNCC	3 cut(s)	394, 469, 735
OliI	CACNNNNGTG	1 cut(s)	264
PagI	TCATGA	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	136, 629, 670
PkrI	GCNGC	2 cut(s)	66, 240
Ppu21I	YACGTR	1 cut(s)	799
PshBI	ATTAAT	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	394, 469, 735
PstI	CTGCAG	1 cut(s)	243
RsaI	GTAC	3 cut(s)	255, 497, 512
RsaNI	GTAC	3 cut(s)	254, 496, 511
RseI	CAYNNNNRTG	2 cut(s)	264, 686
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	111, 212
SatI	GCNGC	2 cut(s)	65, 239
Sau3AI	GATC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	2 cut(s)	374, 619
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	553, 799
SfcI	CTRYAG	2 cut(s)	239, 708
SmiMI	CAYNNNNRTG	2 cut(s)	264, 686
SnaBI	TACGTA	1 cut(s)	799
Sse9I	AATT	4 cut(s)	68, 213, 643, 758
SsiI	CCGC	2 cut(s)	490, 560
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	3 cut(s)	332, 396, 825
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	3 cut(s)	516, 575, 801
TasI	AATT	4 cut(s)	68, 213, 643, 758
TfiI	GAWTC	3 cut(s)	136, 629, 670
Tru1I	TTAA	2 cut(s)	111, 212
Tru9I	TTAA	2 cut(s)	111, 212
TseI	GCWGC	2 cut(s)	64, 238
TspDTI	ATGAA	4 cut(s)	17, 463, 683, 768
VspI	ATTAAT	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	3 cut(s)	194, 319, 394
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.