RchiOBHm_Chr5g0035811

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001196
Physical Location & Seq
Reverse (-)
29829469 .. 29830243
775 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31465

Sequence Viewer

Length: 261 bp
ATGGTAACTGACTATATCCTTTGCAAATTTAGTTTTGCTTATGTGAATGGTATATTTTGTGAAACTTTTCACATGGAAGCGGAAGGCTGGAGAGACTGTGCTGTTTGTGCGAAGCCACTCCATTGTGGGTGCATTATGTCACGCCACAAGTATGCACCACTGGATTTTGGAGGTGTAGGTTGCACAAAATGCTTACTAGAAGTTGATCAATCTATTGCTTCAGGTCGAATGACCAGAATGCTGAAAGAAATAGGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

6.79

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 22 - 66 1.9e-22 VAL1-like, N-terminal zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 66
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse1I ACTGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 165
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 107, 189
BtsIMutI CAGTG 1 cut(s) 158
CviAII CATG 1 cut(s) 73
CviJI RGCY 2 cut(s) 87, 115
CviKI_1 RGCY 2 cut(s) 87, 115
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 204
FaeI CATG 1 cut(s) 76
FaiI YATR 6 cut(s) 15, 42, 53, 74, 137, 153
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 205
FspBI CTAG 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 109
Hin1II CATG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 4 cut(s) 24, 132, 155, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 189
Hsp92II CATG 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 73, 146, 207, 247
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 4, 138
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MluCI AATT 1 cut(s) 26
MnlI CCTC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 107, 189
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 138
PctI GAATGC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 150
Sau3AI GATC 1 cut(s) 205
SetI ASST 3 cut(s) 175, 181, 226
SgeI CNNG 8 cut(s) 85, 100, 153, 160, 173, 209, 234, 246
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 26
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 226
TasI AATT 1 cut(s) 26
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 138
TspRI CASTG 1 cut(s) 165
XapI RAATTY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.