Rh5BG245100

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001196
Physical Location & Seq
Reverse (-)
29752854 .. 29753898
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG245100.1

Sequence Viewer

Length: 228 bp
ATGGTAACTTACTTAATCCTTTACAAAGTTAGTTTTGCTTATGTGAATGGTACATTTTGTGAAACTTTTCACATGGAAGCAGAAGGCTGGAGAGACTGTGCTGTTTGTGGGAAGCCACTCCATTGTGGGTGCATTATGTCATGCAACAAGTATGCACCACTGGATTTCGGAGGTGTAGGTTGCTCAAAATGCTTACCAGAAGTTGATCAGTCTATTGCTTCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

75

Amino Acids

8.17

Weight (kDa)

5.45

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 22 - 66 4.9e-22 VAL1-like, N-terminal zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 66
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bse1I ACTGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 165
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 98
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 73, 141
CviJI RGCY 2 cut(s) 87, 115
CviKI_1 RGCY 2 cut(s) 87, 115
CviQI GTAC 1 cut(s) 51
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 204
FaeI CATG 2 cut(s) 76, 144
FaiI YATR 5 cut(s) 42, 74, 137, 142, 153
FatI CATG 2 cut(s) 72, 140
FbaI TGATCA 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 109
Hin1II CATG 2 cut(s) 76, 144
Hpy188I TCNGA 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 132, 144, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 76, 144
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 73, 146, 207, 210
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MnlI CCTC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 76, 144
PdmI GAANNNNTTC 1 cut(s) 66
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 1 cut(s) 205
SetI ASST 3 cut(s) 175, 181, 226
SgeI CNNG 6 cut(s) 85, 100, 153, 160, 173, 209
TaaI ACNGT 1 cut(s) 98
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 165
TspRI CASTG 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.