Rmu_sc0002935.1_g000006

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002935.1
OG0001196
Physical Location & Seq
Reverse (-)
35439 .. 36557
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002935.1_g000006.1.cds

Sequence Viewer

Length: 411 bp
atgtcatgcaacaagtatgcaccactggatttcggagatgtaggttgctcaaaatgcttactagaagttgatcagtctattgcttcaggtcgaatgaccagaatgctgaaagaaatagttgccacttataagacagatccaacagtttcatctaatcctactgagaaagttgtcgagtccctttctcctggatcttcacaagcgcctgctcctcattttggagaagaagccaatacggatgcatctaaaggagatatagcttgtgaaaccaaagtagacagtgaaacacctccagtggatatctccacaggaaaccatttacaccctgacaatctgccgaagatgacaagtgctgagcaactccaaaaagtctccggaaagtatccattaatcttgtgtcataggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

136

Amino Acids

14.64

Weight (kDa)

5.28

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccI GTMKAC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 374
AclWI GGATC 2 cut(s) 131, 199
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 218
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 2 cut(s) 131, 199
Aor13HI TCCGGA 1 cut(s) 374
AseI ATTAAT 1 cut(s) 389
AspLEI GCGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 206
BfuI GTATCC 1 cut(s) 393
BlpI GCTNAGC 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 229, 251
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 30, 293
BseAI TCCGGA 1 cut(s) 374
BseBI CCWGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 2 cut(s) 153, 345
BseNI ACTGG 2 cut(s) 30, 293
BseRI GAGGAG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 374
Bsp143I GATC 3 cut(s) 70, 136, 191
Bsp1720I GCTNAGC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 154, 346
BspEI TCCGGA 1 cut(s) 374
BspPI GGATC 2 cut(s) 131, 199
BsrI ACTGG 2 cut(s) 30, 293
BssMI GATC 3 cut(s) 70, 136, 191
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 145, 281
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 162, 354
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 73, 139, 194
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 3 cut(s) 70, 136, 191
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 136, 191
BstYI RGATCY 2 cut(s) 136, 191
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 3 cut(s) 23, 286, 300
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 205
CviAII CATG 1 cut(s) 6
CviJI RGCY 2 cut(s) 230, 260
CviKI_1 RGCY 2 cut(s) 230, 260
DdeI CTNAG 2 cut(s) 162, 354
DpnI GATC 3 cut(s) 72, 138, 193
DpnII GATC 3 cut(s) 70, 136, 191
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 1 cut(s) 9
FaiI YATR 5 cut(s) 7, 18, 129, 257, 402
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 5
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 276
FokI GGATG 1 cut(s) 251
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 1 cut(s) 375
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 9
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 145, 281
HpyCH4V TGCA 3 cut(s) 9, 20, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 162, 354
Hsp92II CATG 1 cut(s) 9
HspAI GCGC 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 70, 136, 191
LmnI GCTCC 1 cut(s) 214
LweI GCATC 2 cut(s) 229, 251
MaeI CTAG 1 cut(s) 62
MalI GATC 3 cut(s) 72, 138, 193
MboI GATC 3 cut(s) 70, 136, 191
MboII GAAGA 3 cut(s) 186, 236, 352
MflI RGATCY 2 cut(s) 136, 191
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 2 cut(s) 222, 300
Mph1103I ATGCAT 1 cut(s) 244
MroI TCCGGA 1 cut(s) 374
MseI TTAA 1 cut(s) 389
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 3 cut(s) 70, 136, 191
NlaIII CATG 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 187
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 389
PsiI TTATAA 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PsuI RGATCY 2 cut(s) 136, 191
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 3 cut(s) 70, 136, 191
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 189
SetI ASST 5 cut(s) 46, 91, 262, 292, 407
SfaNI GCATC 2 cut(s) 229, 251
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 145, 281
TaqI TCGA 2 cut(s) 91, 174
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 3 cut(s) 30, 286, 300
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 30, 286, 300
VspI ATTAAT 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.