Rmu_sc0000084.1_g000038

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000084.1
OG0001196
Physical Location & Seq
Reverse (-)
152081 .. 153226
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000084.1_g000038.1.cds

Sequence Viewer

Length: 411 bp
atgtcatgccacaagtatgcaccactggatttcggaggtgtaggttgcacaaaatgcttactagaagttgatcaatctattgcttcaggtcgaatgaccagaatgctgaaagaaatagttgccaagtacaagatggacccaacagtttcatctgatcctactaagaaagtttttgagtccctttttcctgaatctttacaagctccagcacctcagattggagaagaatccaatacggatgcatctaaaggagatacagcttgtgaagccaaagtaggcactgaaacacctcaagtggatgcctccacaggaaaccatttacaccctgacaatctgccgaagatgacaagggctgagcaactccaaaaagtctccagaaagtatccattaatcttgtgtcataggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

6.89

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 218
AluBI AGCT 2 cut(s) 203, 260
AluI AGCT 2 cut(s) 203, 260
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BccI CCATC 1 cut(s) 127
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 393
BlpI GCTNAGC 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 3 cut(s) 229, 251, 289
BpmI CTGGAG 2 cut(s) 189, 358
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 244, 304
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 2 cut(s) 227, 345
BseNI ACTGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 70, 154
Bsp1720I GCTNAGC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 226, 346
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 30
BssMI GATC 2 cut(s) 70, 154
Bst4CI ACNGT 1 cut(s) 145
BstAPI GCANNNNNTGC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 162, 213, 354
BstF5I GGATG 2 cut(s) 244, 304
BstKTI GATC 2 cut(s) 73, 157
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 70, 154
BstMWI GCNNNNNNNGC 2 cut(s) 54, 266
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 244, 304
BtsIMutI CAGTG 2 cut(s) 23, 279
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 6
CviJI RGCY 4 cut(s) 203, 260, 269, 353
CviKI_1 RGCY 4 cut(s) 203, 260, 269, 353
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 3 cut(s) 162, 213, 354
DpnI GATC 2 cut(s) 72, 156
DpnII GATC 2 cut(s) 70, 154
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 18, 402
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 5
FbaI TGATCA 1 cut(s) 70
FokI GGATG 2 cut(s) 251, 311
FspBI CTAG 1 cut(s) 62
GsuI CTGGAG 2 cut(s) 189, 358
Hin1II CATG 1 cut(s) 9
HinfI GANTC 3 cut(s) 176, 191, 227
Hpy188I TCNGA 3 cut(s) 35, 154, 216
Hpy188III TCNNGA 2 cut(s) 188, 375
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 20, 48, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 266
HpyF3I CTNAG 3 cut(s) 162, 213, 354
Hsp92II CATG 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 154
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 11, 72, 112, 201, 219, 294, 339, 388
LweI GCATC 3 cut(s) 229, 251, 289
MaeI CTAG 1 cut(s) 62
MalI GATC 2 cut(s) 72, 156
MboI GATC 2 cut(s) 70, 154
MboII GAAGA 2 cut(s) 236, 352
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 4 cut(s) 29, 222, 300, 313
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 54, 266
NdeII GATC 2 cut(s) 70, 154
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 191, 227
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 2 cut(s) 70, 154
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 185
SetI ASST 8 cut(s) 40, 46, 91, 205, 214, 262, 292, 407
SfaNI GCATC 3 cut(s) 229, 251, 289
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 91
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 2 cut(s) 191, 227
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 2 cut(s) 30, 286
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 30, 286
VpaK11BI GGWCC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.