B3 DNA binding domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf_VAL1_N | PF25813 | 2 - 42 | 2.1e-19 | VAL1-like, N-terminal zinc finger domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 132 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 490 |
| AgsI | TTSAA | 1 cut(s) | 278 |
| AhlI | ACTAGT | 2 cut(s) | 428, 445 |
| AjnI | CCWGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| Alw26I | GTCTC | 2 cut(s) | 15, 397 |
| AoxI | GGCC | 1 cut(s) | 498 |
| AspS9I | GGNCC | 2 cut(s) | 284, 350 |
| AsuHPI | GGTGA | 1 cut(s) | 505 |
| AvaII | GGWCC | 2 cut(s) | 284, 350 |
| BccI | CCATC | 2 cut(s) | 188, 483 |
| BciT130I | CCWGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| BclI | TGATCA | 1 cut(s) | 133 |
| BcoDI | GTCTC | 2 cut(s) | 15, 397 |
| BcuI | ACTAGT | 2 cut(s) | 428, 445 |
| BfaI | CTAG | 3 cut(s) | 125, 429, 446 |
| BfmI | CTRYAG | 3 cut(s) | 228, 294, 360 |
| Bme1390I | CCNGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| Bme18I | GGWCC | 2 cut(s) | 284, 350 |
| BmgT120I | GGNCC | 2 cut(s) | 284, 350 |
| BmrFI | CCNGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| BmsI | GCATC | 1 cut(s) | 47 |
| BpmI | CTGGAG | 2 cut(s) | 37, 443 |
| BsaJI | CCNNGG | 3 cut(s) | 319, 397, 484 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 10, 40 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 490 |
| Bse1I | ACTGG | 1 cut(s) | 93 |
| BseBI | CCWGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| BseDI | CCNNGG | 3 cut(s) | 319, 397, 484 |
| BseGI | GGATG | 2 cut(s) | 62, 494 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 490 |
| BseNI | ACTGG | 1 cut(s) | 93 |
| BshFI | GGCC | 1 cut(s) | 500 |
| BslFI | GGGAC | 2 cut(s) | 284, 336 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 490 |
| BsmAI | GTCTC | 2 cut(s) | 15, 397 |
| BsmFI | GGGAC | 2 cut(s) | 284, 336 |
| BsmI | GAATGC | 1 cut(s) | 171 |
| BsnI | GGCC | 1 cut(s) | 500 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspANI | GGCC | 1 cut(s) | 500 |
| BsrI | ACTGG | 1 cut(s) | 93 |
| BssECI | CCNNGG | 3 cut(s) | 319, 397, 484 |
| BssMI | GATC | 1 cut(s) | 133 |
| BssT1I | CCWWGG | 1 cut(s) | 397 |
| Bst2UI | CCWGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 467 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstF5I | GGATG | 2 cut(s) | 62, 494 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMAI | GTCTC | 2 cut(s) | 15, 397 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 117, 506 |
| BstNI | CCWGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| BstSCI | CCNGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| BstSFI | CTRYAG | 3 cut(s) | 228, 294, 360 |
| BsuRI | GGCC | 1 cut(s) | 500 |
| BtsCI | GGATG | 2 cut(s) | 62, 494 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 2 cut(s) | 284, 350 |
| CviJI | RGCY | 3 cut(s) | 15, 43, 500 |
| CviKI_1 | RGCY | 3 cut(s) | 15, 43, 500 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| Eco130I | CCWWGG | 1 cut(s) | 397 |
| Eco147I | AGGCCT | 1 cut(s) | 500 |
| Eco47I | GGWCC | 2 cut(s) | 284, 350 |
| Eco57I | CTGAAG | 1 cut(s) | 132 |
| EcoRII | CCWGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| EcoT14I | CCWWGG | 1 cut(s) | 397 |
| EcoT22I | ATGCAT | 1 cut(s) | 62 |
| ErhI | CCWWGG | 1 cut(s) | 397 |
| FaiI | YATR | 7 cut(s) | 65, 81, 230, 341, 406, 507, 523 |
| FaqI | GGGAC | 2 cut(s) | 284, 336 |
| FbaI | TGATCA | 1 cut(s) | 133 |
| FokI | GGATG | 2 cut(s) | 69, 501 |
| FspBI | CTAG | 3 cut(s) | 125, 429, 446 |
| GsuI | CTGGAG | 2 cut(s) | 37, 443 |
| HaeIII | GGCC | 1 cut(s) | 500 |
| HphI | GGTGA | 1 cut(s) | 505 |
| Hpy166II | GTNNAC | 1 cut(s) | 470 |
| Hpy188I | TCNGA | 7 cut(s) | 98, 193, 243, 309, 375, 419, 441 |
| Hpy8I | GTNNAC | 1 cut(s) | 470 |
| HpyAV | CCTTC | 2 cut(s) | 5, 490 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 467 |
| HpyCH4V | TGCA | 4 cut(s) | 60, 83, 111, 509 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 117, 506 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 1 cut(s) | 133 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LweI | GCATC | 1 cut(s) | 47 |
| MaeI | CTAG | 3 cut(s) | 125, 429, 446 |
| MaeIII | GTNAC | 1 cut(s) | 66 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MmeI | TCCRAC | 2 cut(s) | 311, 377 |
| MnlI | CCTC | 2 cut(s) | 92, 467 |
| Mph1103I | ATGCAT | 1 cut(s) | 62 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| MspR9I | CCNGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| Mva1269I | GAATGC | 1 cut(s) | 171 |
| MvaI | CCWGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 117, 506 |
| NdeII | GATC | 1 cut(s) | 133 |
| NmuCI | GTSAC | 1 cut(s) | 66 |
| NsiI | ATGCAT | 1 cut(s) | 62 |
| PceI | AGGCCT | 1 cut(s) | 500 |
| PctI | GAATGC | 1 cut(s) | 171 |
| PfoI | TCCNGGA | 1 cut(s) | 459 |
| Psp6I | CCWGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| PspGI | CCWGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| PspPI | GGNCC | 2 cut(s) | 284, 350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 2 cut(s) | 284, 350 |
| ScrFI | CCNGG | 5 cut(s) | 254, 320, 386, 461, 486 |
| SetI | ASST | 6 cut(s) | 103, 109, 154, 286, 295, 352 |
| SfaNI | GCATC | 1 cut(s) | 47 |
| SfcI | CTRYAG | 3 cut(s) | 228, 294, 360 |
| SinI | GGWCC | 2 cut(s) | 284, 350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| SpeI | ACTAGT | 2 cut(s) | 428, 445 |
| SseBI | AGGCCT | 1 cut(s) | 500 |
| SspMI | CTAG | 3 cut(s) | 125, 429, 446 |
| StuI | AGGCCT | 1 cut(s) | 500 |
| StyD4I | CCNGG | 5 cut(s) | 252, 318, 384, 459, 484 |
| StyI | CCWWGG | 1 cut(s) | 397 |
| TaaI | ACNGT | 2 cut(s) | 26, 467 |
| TaqI | TCGA | 1 cut(s) | 154 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 66 |
| Tsp45I | GTSAC | 1 cut(s) | 66 |
| TspDTI | ATGAA | 1 cut(s) | 510 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspRI | CASTG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 2 cut(s) | 284, 350 |
| XspI | CTAG | 3 cut(s) | 125, 429, 446 |
| Zsp2I | ATGCAT | 1 cut(s) | 62 |