Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0001196

Physical Location & Seq

Genomic Coordinates Forward (+)

89000 .. 97847

Gene Structure 8848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggctgccaaagcttcgtgctttttctgcaaggccgacagtgatcagttcgttaatggctgggagctcaaggatgggtctttcgcccagctctgcaagaaatgcggttttgcttatgtgaatggtatattttgtgaaacttttcacatggaagcagaaggctggagagactgtgctgtttgtgggaagccactccattgtgggtgcattatgtcacgccacaagtatgcaccactggatttcggaggtgtaggttgcacaaaatgcttactagaagttgatcaatctattgcttcaggtcgaatgaccagaatgctgaaagaaatagttgccaagtacaagacggacccaacagtttcatctgatcctactaagaaagtttttgagtccctttttcctgaatctttacaagctccagcacctcagattggagaagaatccaatacggatgcatctaaaggagatacagcttgtgaagccaaagtaggcactgaaacacctcaagtggatgcctccacaggaaaccatttacaccctgacaatctgccgaagatgacaagggctgagcaactccaaaaagtctccagaaacttaaactctgatcttatacctctgtttgagaagtcatcaaccgtaagtgatactaatcacagtacaggatttcttgtgataccgaagaaatatgcagaggaacaatctccaagggacattgaaacaggtccaacgcgtgtagatacaaccctgaaaccagaccaggaacaatctccgatggttatggaaacaagtccagtgcctatagaaacaaatcagaaaacgaaccaggaacaatctctaagggactttgaaacaggtccaacgcctgtagatacaagtctgaaaacagaccaggaacaacctccaaaggatatggagacaagtccaatgcctgtagaaacaagtcataaatcagaccagggacaatctccaaaggatatggaaacaggtccaacgcctgtagaatcaagtctgaaaacagaccagaaatggcctctagacttcccactggaactctatatactgactctaaacttgcactacaaaaaacacatgcacaaggattacagacgcaaggacctctgtgatgtgacggtgaagaagaaaaagaaggagaagaggttagaggcgcatgcagaagagaaagcgatggcagacttgtctgtaacggaatccgagctcaaatactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

408

Amino Acids

45.54

Weight (kDa)

5.58

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963 FvH4_3g20963
prunus_persica	Prupe.4G190000_v2.0.a1 Prupe.4G190000_v2.0.a1 Prupe.4G190000_v2.0.a1 Prupe.4G190000_v2.0.a1
pyrus_communis	pycom03g04090
rosa_chinensis	RchiOBHm_Chr5g0035401 RchiOBHm_Chr5g0035571 RchiOBHm_Chr5g0035811 RchiOBHm_Chr5g0035901
rosa_laevigata	RLG00000033634 RLG00000033647 RLG00000033655
rosa_multiflora	Rmu_sc0000084.1_g000038 Rmu_sc0001394.1_g000007 Rmu_sc0001493.1_g000019 Rmu_sc0002935.1_g000006 Rmu_sc0009046.1_g000009
rosa_roxburghii	Rroxscaffold_1G00044780 Rroxscaffold_1G00045010
rosa_rugosa	Rorug05G0151900
rosa_samantha	Rh5AG244700 Rh5AG244800 Rh5AG245200 Rh5AG245800 Rh5BG245100 Rh5BG245700 Rh5BG246200 Rh5CG276000 Rh5CG276100 Rh5CG276600 Rh5CG276900 Rh5DG253300 Rh5DG253700 Rh5DG254000 Rh5DG254800 Rh6BG099800 Rh6BG384000
rosa_wichuraiana	Rw0G005830 Rw5G022440 Rw5G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	727
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	338, 655
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	713, 845
AjnI	CCWGG	4 cut(s)	753, 819, 885, 951
AluBI	AGCT	6 cut(s)	14, 67, 91, 413, 470, 1213
AluI	AGCT	6 cut(s)	14, 67, 91, 413, 470, 1213
Alw21I	GWGCWC	2 cut(s)	69, 1215
Alw26I	GTCTC	3 cut(s)	162, 586, 905
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	33, 1025
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	1165
AspS9I	GGNCC	5 cut(s)	346, 719, 851, 983, 1111
AsuHPI	GGTGA	1 cut(s)	1141
AvaII	GGWCC	5 cut(s)	346, 719, 851, 983, 1111
BanII	GRGCYC	2 cut(s)	69, 1215
Bbv12I	GWGCWC	2 cut(s)	69, 1215
BccI	CCATC	3 cut(s)	68, 763, 1177
BciT130I	CCWGG	4 cut(s)	755, 821, 887, 953
BclI	TGATCA	2 cut(s)	43, 280
BcoDI	GTCTC	3 cut(s)	162, 586, 905
BfaI	CTAG	2 cut(s)	272, 1031
BfmI	CTRYAG	4 cut(s)	795, 861, 927, 993
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	4 cut(s)	755, 821, 887, 953
Bme18I	GGWCC	5 cut(s)	346, 719, 851, 983, 1111
BmgT120I	GGNCC	5 cut(s)	346, 719, 851, 983, 1111
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	4 cut(s)	755, 821, 887, 953
BmsI	GCATC	3 cut(s)	439, 461, 499
BpmI	CTGGAG	3 cut(s)	184, 399, 568
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	53, 486
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	701, 952
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 1139, 1169
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	240, 788, 1047
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	4 cut(s)	755, 821, 887, 953
BseDI	CCNNGG	2 cut(s)	701, 952
BseGI	GGATG	3 cut(s)	79, 454, 514
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	437, 555
BseNI	ACTGG	3 cut(s)	240, 788, 1047
BseYI	CCCAGC	2 cut(s)	60, 87
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	35, 1027
BsiHKAI	GWGCWC	2 cut(s)	69, 1215
BslFI	GGGAC	4 cut(s)	373, 719, 851, 969
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	3 cut(s)	162, 586, 905
BsmFI	GGGAC	4 cut(s)	373, 719, 851, 969
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	35, 1027
Bsp1286I	GDGCHC	2 cut(s)	69, 1215
Bsp143I	GATC	4 cut(s)	43, 280, 364, 601
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	35, 1027
BspCNI	CTCAG	2 cut(s)	436, 556
BspFNI	CGCG	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	240, 788, 1047
BssECI	CCNNGG	2 cut(s)	701, 952
BssMI	GATC	4 cut(s)	43, 280, 364, 601
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	4 cut(s)	755, 821, 887, 953
Bst4CI	ACNGT	6 cut(s)	41, 173, 355, 634, 653, 1129
Bst6I	CTCTTC	2 cut(s)	1145, 1167
BstAPI	GCANNNNNTGC	2 cut(s)	102, 264
BstC8I	GCNNGC	1 cut(s)	1167
BstDEI	CTNAG	4 cut(s)	372, 423, 564, 833
BstF5I	GGATG	3 cut(s)	79, 454, 514
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	1165
BstKTI	GATC	4 cut(s)	46, 283, 367, 604
BstMAI	GTCTC	3 cut(s)	162, 586, 905
BstMBI	GATC	4 cut(s)	43, 280, 364, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 27, 102, 264, 476
BstNI	CCWGG	4 cut(s)	755, 821, 887, 953
BstNSI	RCATGY	2 cut(s)	1090, 1169
BstSCI	CCNGG	4 cut(s)	753, 819, 885, 951
BstSFI	CTRYAG	4 cut(s)	795, 861, 927, 993
BstUI	CGCG	1 cut(s)	727
BsuRI	GGCC	2 cut(s)	35, 1027
BtgZI	GCGATG	1 cut(s)	1196
BtsCI	GGATG	3 cut(s)	79, 454, 514
BtsIMutI	CAGTG	5 cut(s)	46, 233, 489, 795, 1040
Cac8I	GCNNGC	1 cut(s)	1167
CfoI	GCGC	1 cut(s)	1165
Cfr13I	GGNCC	5 cut(s)	346, 719, 851, 983, 1111
CseI	GACGC	1 cut(s)	1113
Csp6I	GTAC	2 cut(s)	337, 654
CviAII	CATG	3 cut(s)	148, 1087, 1166
CviQI	GTAC	2 cut(s)	337, 654
DdeI	CTNAG	4 cut(s)	372, 423, 564, 833
DpnI	GATC	4 cut(s)	45, 282, 366, 603
DpnII	GATC	4 cut(s)	43, 280, 364, 601
Eam1104I	CTCTTC	2 cut(s)	1145, 1167
EarI	CTCTTC	2 cut(s)	1145, 1167
Ecl136II	GAGCTC	2 cut(s)	67, 1213
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	2 cut(s)	69, 1215
Eco47I	GGWCC	5 cut(s)	346, 719, 851, 983, 1111
Eco53kI	GAGCTC	2 cut(s)	67, 1213
Eco57I	CTGAAG	1 cut(s)	279
EcoICRI	GAGCTC	2 cut(s)	67, 1213
EcoO109I	RGGNCCY	1 cut(s)	1111
EcoRII	CCWGG	4 cut(s)	753, 819, 885, 951
EcoT14I	CCWWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	69, 1215
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	3 cut(s)	151, 1090, 1169
FaqI	GGGAC	4 cut(s)	373, 719, 851, 969
FatI	CATG	3 cut(s)	147, 1086, 1165
FbaI	TGATCA	2 cut(s)	43, 280
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	86, 461, 521
FriOI	GRGCYC	2 cut(s)	69, 1215
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	272, 1031
GlaI	GCGC	1 cut(s)	1164
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	2 cut(s)	64, 91
GsuI	CTGGAG	3 cut(s)	184, 399, 568
HaeIII	GGCC	2 cut(s)	35, 1027
HgaI	GACGC	1 cut(s)	1113
HhaI	GCGC	1 cut(s)	1165
Hin1II	CATG	3 cut(s)	151, 1090, 1169
Hin6I	GCGC	1 cut(s)	1163
HinP1I	GCGC	1 cut(s)	1163
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	6 cut(s)	386, 401, 437, 998, 1060, 1205
HphI	GGTGA	1 cut(s)	1141
Hpy188III	TCNNGA	3 cut(s)	398, 585, 1031
HpyAV	CCTTC	2 cut(s)	152, 1138
HpyCH4III	ACNGT	6 cut(s)	41, 173, 355, 634, 653, 1129
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 27, 102, 264, 476
HpyF3I	CTNAG	4 cut(s)	372, 423, 564, 833
Hsp92II	CATG	3 cut(s)	151, 1090, 1169
HspAI	GCGC	1 cut(s)	1163
Ksp22I	TGATCA	2 cut(s)	43, 280
Kzo9I	GATC	4 cut(s)	43, 280, 364, 601
LmnI	GCTCC	2 cut(s)	64, 418
LweI	GCATC	3 cut(s)	439, 461, 499
MaeI	CTAG	2 cut(s)	272, 1031
MaeIII	GTNAC	3 cut(s)	213, 1123, 1198
MalI	GATC	4 cut(s)	45, 282, 366, 603
MboI	GATC	4 cut(s)	43, 280, 364, 601
MboII	GAAGA	7 cut(s)	446, 562, 688, 1144, 1147, 1162, 1184
MhlI	GDGCHC	2 cut(s)	69, 1215
MluI	ACGCGT	1 cut(s)	725
MlyI	GAGTC	2 cut(s)	395, 1054
MmeI	TCCRAC	3 cut(s)	746, 878, 1010
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	2 cut(s)	54, 593
MslI	CAYNNNNRTG	1 cut(s)	225
MspR9I	CCNGG	4 cut(s)	755, 821, 887, 953
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	4 cut(s)	755, 821, 887, 953
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	5 cut(s)	11, 27, 102, 264, 476
NdeII	GATC	4 cut(s)	43, 280, 364, 601
NlaIII	CATG	3 cut(s)	151, 1090, 1169
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	213, 1123
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	1090, 1169
PaeI	GCATGC	1 cut(s)	1169
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	401, 437, 998, 1205
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	394, 1054
PpsI	GAGTC	2 cut(s)	394, 1054
PpuMI	RGGWCCY	1 cut(s)	1111
Psp124BI	GAGCTC	2 cut(s)	69, 1215
Psp5II	RGGWCCY	1 cut(s)	1111
Psp6I	CCWGG	4 cut(s)	753, 819, 885, 951
PspFI	CCCAGC	2 cut(s)	60, 87
PspGI	CCWGG	4 cut(s)	753, 819, 885, 951
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	5 cut(s)	346, 719, 851, 983, 1111
PspPPI	RGGWCCY	1 cut(s)	1111
PsrI	GAACNNNNNNTAC	2 cut(s)	1038, 1070
RsaI	GTAC	2 cut(s)	338, 655
RsaNI	GTAC	2 cut(s)	337, 654
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	2 cut(s)	69, 1215
SaqAI	TTAA	2 cut(s)	54, 593
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	43, 280, 364, 601
Sau96I	GGNCC	5 cut(s)	346, 719, 851, 983, 1111
SchI	GAGTC	2 cut(s)	395, 1054
ScrFI	CCNGG	4 cut(s)	755, 821, 887, 953
SduI	GDGCHC	2 cut(s)	69, 1215
SfaNI	GCATC	3 cut(s)	439, 461, 499
SfcI	CTRYAG	4 cut(s)	795, 861, 927, 993
SinI	GGWCC	5 cut(s)	346, 719, 851, 983, 1111
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	68, 501
SmoI	CTYRAG	2 cut(s)	68, 501
SphI	GCATGC	1 cut(s)	1169
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	272, 1031
SstI	GAGCTC	2 cut(s)	69, 1215
StyD4I	CCNGG	4 cut(s)	753, 819, 885, 951
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	6 cut(s)	41, 173, 355, 634, 653, 1129
TaqI	TCGA	1 cut(s)	301
TatI	WGTACW	2 cut(s)	336, 653
TfiI	GAWTC	4 cut(s)	401, 437, 998, 1205
Tru1I	TTAA	2 cut(s)	54, 593
Tru9I	TTAA	2 cut(s)	54, 593
TscAI	CASTG	5 cut(s)	46, 240, 496, 795, 1047
TseFI	GTSAC	2 cut(s)	213, 1123
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	213, 1123
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	3 cut(s)	359, 461, 1217
TspRI	CASTG	5 cut(s)	46, 240, 496, 795, 1047
VpaK11BI	GGWCC	5 cut(s)	346, 719, 851, 983, 1111
XbaI	TCTAGA	1 cut(s)	1030
XceI	RCATGY	2 cut(s)	1090, 1169
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	272, 1031
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.