Rh6BG099800

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001196
Physical Location & Seq
Forward (+)
15572610 .. 15575943
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG099800.1

Sequence Viewer

Length: 264 bp
ATGGCTGCCAAAGCTTCGTGCTTTTTCTGCAAGGCCGAGAGTGATCAGTTCGTTAATGGCTGGGAGCTCAAGGATGGGTCTTTCGCCCAGCTCTGCAAGAAATGCGGTTTTGCTTATGTGAATGGTATATTTTGTGAAACTTTTCACATGGAAGCGGAAGGCTGGAGAGACTCTGCTGTTTGTGGGAAGCCACTCCATTGTGGGTGCATTATGTCACGCCACAAGTATGCACCACTGGATTTCAGAGTTTGCTTGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

87

Amino Acids

9.73

Weight (kDa)

6.79

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 47 - 81 6.5e-15 VAL1-like, N-terminal zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 155
AluBI AGCT 3 cut(s) 14, 67, 91
AluI AGCT 3 cut(s) 14, 67, 91
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 162
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 1 cut(s) 68
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 162
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 79, 262
BseNI ACTGG 1 cut(s) 240
BseYI CCCAGC 2 cut(s) 60, 87
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 2 cut(s) 105, 155
BspANI GGCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 240
BssMI GATC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 102
BstF5I GGATG 2 cut(s) 79, 262
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 11, 27, 102
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 79, 262
BtsIMutI CAGTG 1 cut(s) 233
CviAII CATG 1 cut(s) 148
CviJI RGCY 8 cut(s) 5, 14, 35, 60, 67, 91, 162, 190
CviKI_1 RGCY 8 cut(s) 5, 14, 35, 60, 67, 91, 162, 190
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 117, 128, 149, 212, 228
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 2 cut(s) 64, 91
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 30, 96, 207, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 27, 102
Hsp92II CATG 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 46, 101, 148, 221
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 11, 27, 102
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 151
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 2 cut(s) 60, 87
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 69
SetI ASST 3 cut(s) 16, 69, 93
SfaNI GCATC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SsiI CCGC 2 cut(s) 105, 155
SstI GAGCTC 1 cut(s) 69
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 213
TspRI CASTG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.