Rw0G005830

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00232
OG0001196
Physical Location & Seq
Forward (+)
2964 .. 9946
6983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005830.1

Sequence Viewer

Length: 1176 bp
ATGGCTGCCAAAGCTTCGTGCTTTTTCTGCAAGGCTGACAGTGGTCAGTTCGTTAATGGCTGGGAGCTCAAGGATGGGTCTTTCGCCCAGCTCTGCAAGAAATGCGGTTTTGCTTATGTGAATGGTATATTTTGTGAAACTTTTCACATGGAAGCAGAAGGCTGGAGAGACTGTGCTGTTTGTGGGAAGCCACTCCATTGTGGGTGCATTATGTCACGCCACAAGTATGCACCACTGGATTTCGGAGGTGTAGGTTGCACAAAATGCTTACTAGAAGTTGATCAATCTATTGCTTCAGGTCGAATGACCAGAATGCTGAAAGAAATAGTTGCCAAGTACAAGACGGACCCAACAGTTTCATCTGATCCTACTAAGAAAGTTTTTGAGTCCCTTTTTGCTGAATCTTTACAAGCTCCAGCACCTCAGATTGGAGAAGAATCCAATACGGATGCATCTAAAGGAGATACAGCTTGTGAAGCCAAAGTAGGCACTGAAACACCTCAAGTGGATGCCTCCACAGGAAACCATTTACACCCTGACAATCTGCCGAAGATGACAAGGGCTGAGCAACTCCAAAAAGTCTCCAGAAACTTAAACTCTGATCTTATACCTCTGTTTGAGAAGTCATCAATCGTAAGTGATACTAATCACAGTACAGGATTTCTTGTGATACCGAAGAAATATGCAGAGGAACAATCTCCAAGGGACATTGAAACAGGTCTAACACCTGTAGATACAAGTCTGAAAGCAGACCAGGAACAATCTCCAATGGATGTGGTAACAAATCAGAAAACAAACCAGGAACAATCTCCAAGGGACAATGAAACAGGTCCAACGCGTGTAGATACAACTCTGAAACCAGACCAGGAACAATCTCCGATGGTTATGGAAACAAGTCCAGTGCCTATAGAAACAAATCAGAAAACGAACCAGGAACAATCTCTAAGGGACTTTAAAGCAGGTCCAACACCTGTAGTTACAAGTCTGAAAACAGACCAGGAACAACCTTCAATGGATATGGAGACGAGTCCAATGCCTGTAGAAACAAGTCATAAATCAGACCAGGGACAATCTCCAAAGGATATGGAAACAGGTCCAACGCCTGTAGAAACAAGTCTGAAAACAGACCAGGAACAGTCTCCCAAGGGATATGGAAACAAGTCCAAAACAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

391

Amino Acids

42.81

Weight (kDa)

5.05

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 47 - 91 2e-21 VAL1-like, N-terminal zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 950
AccII CGCG 1 cut(s) 838
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 338, 655
AfiI CCNNNNNNNGG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 836
AgsI TTSAA 2 cut(s) 713, 1011
AjnI CCWGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
AluBI AGCT 5 cut(s) 14, 67, 91, 413, 470
AluI AGCT 5 cut(s) 14, 67, 91, 413, 470
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 4 cut(s) 162, 586, 1016, 1143
AlwI GGATC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 4 cut(s) 346, 830, 962, 1094
AvaII GGWCC 4 cut(s) 346, 830, 962, 1094
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 2 cut(s) 68, 874
BcgI CGANNNNNNTGC 2 cut(s) 1015, 1049
BciT130I CCWGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 4 cut(s) 162, 586, 1016, 1143
BfaI CTAG 2 cut(s) 272, 1174
BfmI CTRYAG 5 cut(s) 729, 906, 972, 1038, 1104
BfuAI ACCTGC 1 cut(s) 950
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
Bme18I GGWCC 4 cut(s) 346, 830, 962, 1094
BmgT120I GGNCC 4 cut(s) 346, 830, 962, 1094
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
BmsI GCATC 3 cut(s) 439, 461, 499
BoxI GACNNNNGTC 1 cut(s) 42
BpmI CTGGAG 3 cut(s) 184, 399, 568
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 2 cut(s) 53, 486
BsaBI GATNNNNATC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 701, 812, 1063, 1143
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 240, 899
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
BseDI CCNNGG 4 cut(s) 701, 812, 1063, 1143
BseGI GGATG 4 cut(s) 79, 454, 514, 778
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 437, 555
BseNI ACTGG 2 cut(s) 240, 899
BseYI CCCAGC 2 cut(s) 60, 87
Bsh1236I CGCG 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 69
BslFI GGGAC 5 cut(s) 373, 719, 830, 962, 1080
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 4 cut(s) 162, 586, 1016, 1143
BsmBI CGTCTC 1 cut(s) 1016
BsmFI GGGAC 5 cut(s) 373, 719, 830, 962, 1080
BsmI GAATGC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 280, 364, 601
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 436, 556
BspFNI CGCG 1 cut(s) 838
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 950
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 240, 899
BssECI CCNNGG 4 cut(s) 701, 812, 1063, 1143
BssMI GATC 3 cut(s) 280, 364, 601
BssT1I CCWWGG 3 cut(s) 701, 812, 1143
Bst2UI CCWGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
Bst4CI ACNGT 5 cut(s) 41, 173, 355, 653, 1137
BstAPI GCANNNNNTGC 2 cut(s) 102, 264
BstDEI CTNAG 4 cut(s) 372, 423, 564, 944
BstF5I GGATG 4 cut(s) 79, 454, 514, 778
BstFNI CGCG 1 cut(s) 838
BstKTI GATC 3 cut(s) 283, 367, 604
BstMAI GTCTC 4 cut(s) 162, 586, 1016, 1143
BstMBI GATC 3 cut(s) 280, 364, 601
BstMWI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
BstNI CCWGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
BstPAI GACNNNNGTC 1 cut(s) 42
BstSCI CCNGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
BstSFI CTRYAG 5 cut(s) 729, 906, 972, 1038, 1104
BstUI CGCG 1 cut(s) 838
BtsCI GGATG 4 cut(s) 79, 454, 514, 778
BtsIMutI CAGTG 4 cut(s) 46, 233, 489, 906
BveI ACCTGC 1 cut(s) 950
Cfr13I GGNCC 4 cut(s) 346, 830, 962, 1094
Csp6I GTAC 2 cut(s) 337, 654
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 1 cut(s) 148
CviQI GTAC 2 cut(s) 337, 654
DdeI CTNAG 4 cut(s) 372, 423, 564, 944
DpnI GATC 3 cut(s) 282, 366, 603
DpnII GATC 3 cut(s) 280, 364, 601
DraI TTTAAA 1 cut(s) 955
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 701, 812, 1143
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 4 cut(s) 346, 830, 962, 1094
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
EcoT14I CCWWGG 3 cut(s) 701, 812, 1143
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 3 cut(s) 701, 812, 1143
Esp3I CGTCTC 1 cut(s) 1016
FaeI CATG 1 cut(s) 151
FaqI GGGAC 5 cut(s) 373, 719, 830, 962, 1080
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 4 cut(s) 86, 461, 521, 785
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 272, 1174
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 2 cut(s) 64, 91
GsuI CTGGAG 3 cut(s) 184, 399, 568
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 386, 401, 437, 1027
Hpy188III TCNNGA 1 cut(s) 585
HpyAV CCTTC 2 cut(s) 152, 1017
HpyCH4III ACNGT 5 cut(s) 41, 173, 355, 653, 1137
HpyCH4V TGCA 7 cut(s) 30, 96, 207, 230, 258, 452, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
HpyF3I CTNAG 4 cut(s) 372, 423, 564, 944
Hsp92II CATG 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 280, 364, 601
LmnI GCTCC 2 cut(s) 64, 418
LweI GCATC 3 cut(s) 439, 461, 499
MaeI CTAG 2 cut(s) 272, 1174
MaeIII GTNAC 3 cut(s) 213, 778, 976
MalI GATC 3 cut(s) 282, 366, 603
MboI GATC 3 cut(s) 280, 364, 601
MboII GAAGA 3 cut(s) 446, 562, 688
MhlI GDGCHC 1 cut(s) 69
MluI ACGCGT 1 cut(s) 836
MlyI GAGTC 2 cut(s) 395, 1036
MmeI TCCRAC 3 cut(s) 857, 989, 1121
MnlI CCTC 6 cut(s) 239, 432, 510, 523, 621, 682
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 3 cut(s) 54, 593, 954
MslI CAYNNNNRTG 1 cut(s) 225
MspR9I CCNGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 5 cut(s) 11, 27, 102, 264, 476
NdeII GATC 3 cut(s) 280, 364, 601
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 454
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 401, 437
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 394, 1035
PpsI GAGTC 2 cut(s) 394, 1035
PshAI GACNNNNGTC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
PspFI CCCAGC 2 cut(s) 60, 87
PspGI CCWGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 4 cut(s) 346, 830, 962, 1094
RsaI GTAC 2 cut(s) 338, 655
RsaNI GTAC 2 cut(s) 337, 654
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 54, 593, 954
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 280, 364, 601
Sau96I GGNCC 4 cut(s) 346, 830, 962, 1094
SchI GAGTC 2 cut(s) 395, 1036
ScrFI CCNGG 7 cut(s) 755, 800, 866, 932, 998, 1064, 1130
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 439, 461, 499
SfcI CTRYAG 5 cut(s) 729, 906, 972, 1038, 1104
SinI GGWCC 4 cut(s) 346, 830, 962, 1094
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 68, 501
SmoI CTYRAG 2 cut(s) 68, 501
SsiI CCGC 1 cut(s) 105
SspMI CTAG 2 cut(s) 272, 1174
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 7 cut(s) 753, 798, 864, 930, 996, 1062, 1128
StyI CCWWGG 3 cut(s) 701, 812, 1143
TaaI ACNGT 5 cut(s) 41, 173, 355, 653, 1137
TaqI TCGA 1 cut(s) 301
TatI WGTACW 2 cut(s) 336, 653
TfiI GAWTC 2 cut(s) 401, 437
Tru1I TTAA 3 cut(s) 54, 593, 954
Tru9I TTAA 3 cut(s) 54, 593, 954
TscAI CASTG 4 cut(s) 46, 240, 496, 906
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 348, 837
TspGWI ACGGA 2 cut(s) 359, 461
TspRI CASTG 4 cut(s) 46, 240, 496, 906
VpaK11BI GGWCC 4 cut(s) 346, 830, 962, 1094
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 2 cut(s) 272, 1174
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.